Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1716 ATGCCGGGGCACCGCTCGAACTCGGAGAAGCACGACGGCGAGAAGCAGCTCCGGCGAGACCCCTACGAGGTCCTCGGCGTCTCGCGCAACTCCACGGATCAGGAAATCAAAACCGCGTACCGCAAAATGGCGCTCAAatACCACCCGGACAAGAATGCTAATGATCCTAAAGCAGCTGATATGTTTAAAGAGGTTACCTTTTCTTATAATATCCTGTCAGATCCTGACAAACGGCGTCAGTATGACTCAGCTGGCTTTGAGGCTGTTGAATCAGATAACCAAGAGTTGGAGTTAGATCTTTCGAGTCTGGGTGCTGTCAATACAATGTTTGCAGCACTTTTTAGTAAACTTGGTGTGCCGATTAAGACAACCGTATCTGCAACTGTTTTGGAAGAGGCACTAAATGGTATAGTGACCATTCGTCCACTTCTGTTGGGACAATATATATCTAAAAGGGTTGAGAAGCAATGTGCACACTTCTATTCAGTTACAATAACAGAAGAGGAAGCACAAGCTGGATTTGTTTGTCGAGTACAATCGTCAGACAAAAGCAAGTTCAAGTTATTGTATTTCGATCAGGAAGACAACAGTGGTTTAAGTCTTGCACTCcagGAAGACAGTGCAAAAACAGGGAAGGTTACCTCTGCTGGGATGTATTTTCTTGGGTTTCCTGTTTATCGGCTGGATCAAACAATGAACTCTATAGCTGCTTCTAAGGATCCAGATACATCATTTTCAGAAAGCTGGATGGGTTTCAGCCCTGAATTGACTGTCAAATTTCTTCTAGGTgacaactttttcaaaagtgCAAACTATACAATAGAAGCCCTGTGTGCTGCCCCTTttagtgaagaaaaagaaaatttaagaaatatagaAGCTCAAATTTTGTCTAAAAGGGCAGAAATATCAAAGTTTGAGGCAGAATATCGAGAGGTTCTGGCACAATTCTCAGAGATGACAAACAGATATGCACATGAAATGCAAGCAATTGACGAGCTACTGAAGCATAGAAATGAAATACATGCATCATACACTGTTGCTCCTTTAAAACGGAGTACAAGTAAGAGCAGAAGTAAAAGTTCTTCCAAGGAGGCAAAAGAAGATGGCCAAGCAAGGGAGAAGAGGAGTACAAGAGATCggccaaagaagaagaaatggtATAACCTCCACTTAAGAGTTGATAAGAGAAAGGCTTGCTAA 1203 0.4057 MPGHRSNSEKHDGEKQLRRDPYEVLGVSRNSTDQEIKTAYRKMALKYHPDKNANDPKAADMFKEVTFSYNILSDPDKRRQYDSAGFEAVESDNQELELDLSSLGAVNTMFAALFSKLGVPIKTTVSATVLEEALNGIVTIRPLLLGQYISKRVEKQCAHFYSVTITEEEAQAGFVCRVQSSDKSKFKLLYFDQEDNSGLSLALQEDSAKTGKVTSAGMYFLGFPVYRLDQTMNSIAASKDPDTSFSESWMGFSPELTVKFLLGDNFFKSANYTIEALCAAPFSEEKENLRNIEAQILSKRAEISKFEAEYREVLAQFSEMTNRYAHEMQAIDELLKHRNEIHASYTVAPLKRSTSKSRSKSSSKEAKEDGQAREKRSTRDRPKKKKWYNLHLRVDKRKAC 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1716 400 MobiDBLite consensus disorder prediction 1 30 - -
Ssu2g1716 400 Coils Coil 282 309 - -
Ssu2g1716 400 MobiDBLite consensus disorder prediction 358 377 - -
Ssu2g1716 400 SUPERFAMILY Chaperone J-domain 19 89 IPR036869 -
Ssu2g1716 400 Pfam DnaJ domain 20 82 IPR001623 -
Ssu2g1716 400 ProSiteProfiles dnaJ domain profile. 20 85 IPR001623 -
Ssu2g1716 400 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 1 399 - -
Ssu2g1716 400 MobiDBLite consensus disorder prediction 378 392 - -
Ssu2g1716 400 PANTHER DNAJ DOMAIN-CONTAINING PROTEIN-RELATED 1 399 - -
Ssu2g1716 400 Gene3D DnaJ domain 4 103 IPR036869 -
Ssu2g1716 400 CDD DnaJ 20 74 IPR001623 -
Ssu2g1716 400 SMART dnaj_3 19 77 IPR001623 -
Ssu2g1716 400 ProSitePatterns Nt-dnaJ domain signature. 62 81 IPR018253 -
Ssu2g1716 400 MobiDBLite consensus disorder prediction 1 22 - -
Ssu2g1716 400 MobiDBLite consensus disorder prediction 346 400 - -
Ssu2g1716 400 PRINTS DnaJ domain signature 22 40 IPR001623 -
Ssu2g1716 400 PRINTS DnaJ domain signature 57 77 IPR001623 -
Ssu2g1716 400 PRINTS DnaJ domain signature 77 96 IPR001623 -
Ssu2g1716 400 PRINTS DnaJ domain signature 40 55 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1716 Ssu-Chr2 66761681 66765757 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1716 18 83 C2H2 Transcription Factor Family AT1G74250 42.254 5.42e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1716 - - gmx:100800929 702.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1716 2 66761681 66765757 Ssu2g1716 2 66761681 66765757 ECH