Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1715 ATGGAAAAGGATATCTGTGATCTTTCTCCAACATGGGATGGTGATAATGGCAATTCAACTGAGAAAAGGCTCAGGTTATTTGGCTTTGAGCTAAACCCTTCAAAAGAGGGCTGTGTCAAAGAGTCTAGTGAAGGAGATGAAAGTGTGAACTCCTCTAATTCAGTCTCATCAGGAGGAGAGAAAACTGTGCAAGAGAAGACCTCAGCCAAAGACCCAGATGAGAAAAAGTTCGAGTGCCAATACTGTTTCAAAGAATTTGCAAACTCACAAGCACTGGGAGGCCACCAAAATGCccacaagaaagaaagaatgaagaagaagaggcTGCAGCTTCAATCCATAAACCGATACCTACAACACCCTTTGCAAACCAACCATGGCTTTGCTTACCAAACCTCTGATACTCCTTGGTTCTATGACCCTTCTACCTATAGGTCTGAGTTCACCCTTTGTGAAGAACCTCAGATTAGCTTCAATTCAAATGTTTTAGATACCAACTTTTCTTGTGATCAGAAATCTAGCTGGTATTCTCTGGCATCCCACCCTCCTTCCCAGCAAGATACTTGCATGTTCACTTTCTCCAATGCAAATAATAGTCCTTTCATCGTCAAGCCTTGCCACTTCCCTGCTTCAAACCAGAGCCATAGTAAAGCCCTAGATCTTCAACTAGGCCTCAACTTGCAGTCAAATACAAGAAGTTCTCTAAGAAGGACGTGA 717 0.41 MEKDICDLSPTWDGDNGNSTEKRLRLFGFELNPSKEGCVKESSEGDESVNSSNSVSSGGEKTVQEKTSAKDPDEKKFECQYCFKEFANSQALGGHQNAHKKERMKKKRLQLQSINRYLQHPLQTNHGFAYQTSDTPWFYDPSTYRSEFTLCEEPQISFNSNVLDTNFSCDQKSSWYSLASHPPSQQDTCMFTFSNANNSPFIVKPCHFPASNQSHSKALDLQLGLNLQSNTRSSLRRT 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1715 238 PANTHER ZINC FINGER PROTEIN 5 17 228 IPR044299 GO:0010090
Ssu2g1715 238 SUPERFAMILY beta-beta-alpha zinc fingers 73 104 IPR036236 -
Ssu2g1715 238 PANTHER ZINC FINGER PROTEIN 5 17 228 - -
Ssu2g1715 238 MobiDBLite consensus disorder prediction 35 70 - -
Ssu2g1715 238 ProSitePatterns Zinc finger C2H2 type domain signature. 79 99 IPR013087 -
Ssu2g1715 238 Gene3D Classic Zinc Finger 51 128 - -
Ssu2g1715 238 MobiDBLite consensus disorder prediction 44 63 - -
Ssu2g1715 238 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 104 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1715 Ssu-Chr2 66717059 66717775 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1715 11 113 C2H2 Transcription Factor Family AT5G06650 42.453 2.21e-17 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu2g1715 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1715 - - gmx:100527006 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1715 2 66717059 66717775 Ssu2g1715 2 66717059 66717775 ECH