Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1713 atggtgGTGGTTGGTGCTCTGAGGGGGCACACGAAAGCTATATTGTgtttggtggtggtggcggaTTTGGTGTGCAGTGGATCGGCGGATAACAGTGTTAGGATATGGAGGAGAGGGGTTGAGAAGGGTTATTCGTGTTTGGCTGTGTTGGAAGGTCATCGACGACCCGTGAAGTGTTTGGCTGTGGCGGTTGACTCCAATAGCGGTGGTCCTGAGGATGATAATAGGTCTTATCTGGTTTACAGTGCAGGGCTGGATTGTGACATTAAAGTATGGCAAATACGCGTTCCTCTGTTGTGA 300 0.4533 MVVVGALRGHTKAILCLVVVADLVCSGSADNSVRIWRRGVEKGYSCLAVLEGHRRPVKCLAVAVDSNSGGPEDDNRSYLVYSAGLDCDIKVWQIRVPLL 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1713 99 Gene3D - 1 99 IPR015943 GO:0005515
Ssu2g1713 99 ProSiteProfiles Trp-Asp (WD) repeats profile. 7 36 IPR001680 GO:0005515
Ssu2g1713 99 SMART WD40_4 43 93 IPR001680 GO:0005515
Ssu2g1713 99 SMART WD40_4 1 37 IPR001680 GO:0005515
Ssu2g1713 99 Pfam WD domain, G-beta repeat 5 36 IPR001680 GO:0005515
Ssu2g1713 99 Pfam WD domain, G-beta repeat 45 92 IPR001680 GO:0005515
Ssu2g1713 99 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 1 97 - -
Ssu2g1713 99 SUPERFAMILY WD40 repeat-like 4 95 IPR036322 GO:0005515
Ssu2g1713 99 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 1 97 IPR045182 -
Ssu2g1713 99 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 7 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1713 Ssu-Chr2 66631171 66631470 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1713 3 62 U-box Gene Family AT2G33340 35.484 8.55e-07 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1713 - - vun:114174011 182.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1713 2 66631171 66631470 Ssu2g1713 2 66631171 66631470 ECH