Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1711 ATGAGCTCATCCTCAGAGAAaccttcctcttctccttcttcttcttctcctttgacGCTGTTCGGTTTCCCTTTGACGGCTACGTGCAGTGACGAGCCTCCGGCCAGCGACGGTGATGGCCCGGGCAAGAAAATCGAGTGTCCATTCTGCCATCGCGAATTTCAGAATTTGCAAGCGTTGGGGGGCCACCAAAATGCACATAGGAGAGAAAGACAAATGGCTAGGCTGGCCCAATTTGAATATATCCGTCTACATCAAAGAAACCAAATATTCCAAGCGGTTGCACCTCTTGTGGTTGCGCAAGGAGCATCACCAACCTCTGTTTTCACTGGTGCAACTCGGTTTTGGACAGCACAGGCACCACCTGAGTCATCACAAAAGCTACCTGTGGCGGAGCCACCAGGTACGCACCACCGTCTTGTTCCACCTGTTGTGCAAGTACCTGTTGTAGGGGTTGATGATACTATCGATCTAGAACTGAGGCTGGCTACCTCTTCTAAGAAATCTGGGATGTGA 516 0.4748 MSSSSEKPSSSPSSSSPLTLFGFPLTATCSDEPPASDGDGPGKKIECPFCHREFQNLQALGGHQNAHRRERQMARLAQFEYIRLHQRNQIFQAVAPLVVAQGASPTSVFTGATRFWTAQAPPESSQKLPVAEPPGTHHRLVPPVVQVPVVGVDDTIDLELRLATSSKKSGM 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1711 171 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 72 IPR013087 -
Ssu2g1711 171 SUPERFAMILY beta-beta-alpha zinc fingers 43 73 IPR036236 -
Ssu2g1711 171 PANTHER ZINC FINGER PROTEIN 5 3 167 IPR044299 GO:0010090
Ssu2g1711 171 MobiDBLite consensus disorder prediction 120 139 - -
Ssu2g1711 171 Pfam C2H2-type zinc finger 46 70 - -
Ssu2g1711 171 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
Ssu2g1711 171 PANTHER ZINC FINGER PROTEIN 6-LIKE 3 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1711 Ssu-Chr2 66559371 66559886 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1711 13 100 C2H2 Transcription Factor Family AT1G67030 43.158 1.63e-14 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1711 - - gmx:102669455 208.379