Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1688 ATGAAGAGGTCTAGAGATGAAGTTTTCACGAGTTGTTCTCAACTCAAAAGGCCTGTGGTGTCTTCCCGAGGAGAAGCGTCGGGGCAACCGCAGATGCTGAATGGAGGTTCTCAGAAACTGACAACTAATGATGCCCTAGCATATCTCAAGGCTGTAAAggatatatttcaagataagaGGGACAAGTATGATGACTTTTTGGAGGTCATGAAGGATTTCAAGGCTCAAAGAATTGATACTGCGGGTGTCATTGCAAGAGTGAAGGAACTGTTTAAAGGCCATAGAGATCTTATATTGGGATTTAACACCTTCTTGCCTAAGGGTTATGAAATCACACTTCCATCGGAGGATGAACAACCTCCCCAAAAGAAACCTGTTGAATTTGAAGAAGCTATAAATTTTGTGAACAAGATAAAGACTCGTTTTCAAGGTGATGATCACGTGTACAAATCATTTCTTGACATATTGAACTTGTACAGAAAGGAAAACAAGTCTATTACTGAGGTCTACCATGAGGTTGCTGCTATTTTCCAGGACCACCCTGATCTTCTTGATGAGTTCACTCATTTTCTTCCAGATGCTTCTGCAGCTGCCTCTGCTCATTATGCTTCTGCTCGAAATTCTATGCTTCGTGATAGGAGCTCTGCAATGCCAACAGTACGACAAATGCATGTTGAAAAGCGAGAAAGGACCATGGTTTCACATGGTGATCGTGACCCCAGTGTTGATTGTCCTGACCCAGATCATGACAGAGGTTTGTTAAGGGTAGAAAAGGAGCAGAGGAGACGTGTGGAGAAGGAAAAGGAACATAGAGAAGATAGAGACAAGAGAGAACGTGAAAGGGATGATAGAGATTATGAACATGATGGGGGTCGAGATAGGGAGCGATTCTCTCACAAACGGAGTCGTAAGGCTGAAGACTCTGGAGCTGAACCATTGGTTGATGCAGATGAAAATTTTGGTACGCGTCCTATGTCATCCACCTGTGATGATAAAGATTCTCTGAAAAGTATGTACAGTCAAGAGTTTGCTTTCTGtgaaaaagtcaaagaaaaattacaaaatcctGATGACTACCAAGAATTTTTGAAGTGCTTGCATATTTACAGCAGGGAAATAATTACCCGACAAGAGTTGCAGTCATTGGTGGGCGATTTACTGGGAAAATATCCTGATCTTATGGAGGGGTTTAATGAATTTTTGCTACAATCTGAAAAGAATGATGGTGGATTCCTTGCTGGTGTTATGAATAAAAAGTCCTTATGGAATGATGGACATGGGCTGAAACAAATGAAGGCTGAAGACAGGAATAGAGATCGGGATCGAGATAGAGACCGTTATAGGGATGATGCGATGAAAGAAAGGGATCGTGAATTCCGAGAAAGGGACAAATCTACTGTGATTGCCAACAAGGATGTTTTAGGTCCTAAGATGTCTCTATATCCCAGCAAGGACAAGTATTTGTCAAAACCAATAAATGAGCTGGACCTTTCTAACTGTGACCAATGCACTCCTAGTTACCGCCTCTTACCGAAAAAtTACCCAATACCTGTAGCTAGCCAGAAAACAGAACTTGGAGCAGAAGTGTTGAATGATCACTGGGTGTCTGTCACTTCAGGAAGTGAGGATTATTCCTTCAAACATATGCGCAAAAATCAGTATGAAGAGAGCTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGATATGTTGTTAGAGTCTGTAAATGTGACAACCAAACGAGTAGAAGAGCTGTTAGATAAGatcaataataatacaataaaaggAGACAGCCCAATTCGTATTGAGGAGCACTTAACAGCTATAAATCTTAGGTGCATTGAACGATTATATGGTGACCATGGGCTTGATGTGATGGAAGTGCTAAGGAAGAATGCGCCTCTAGCCTTGCCAGTGATATTAACACGCTTGAAGCAGAAACAGGAAGAGTGGGCAAGGTGTCGTGCTGATTTTAGTAAAGTTTGGGCTGAAATATATGCAAAGAACTATCACAAATCTCTTGATCATCGTAGCTTCTACTTTAAGCAACAGGATACAAAAAGCTTGAGCACCAAAgCCTTGATAGcagaaatcaaagaaattagtGAAAAGAAACGCAAAGAAGATGATGTTCTTCTTGCTATTGCTGCTGGAAATAGACGGCCAATTCTTCCAAACTTGGAGTTTAAGTTTTCTGATCCAGATATTCACGAAGACTTGTATCAGCTCATAAAATATTCCTGTGGAGAAATTTGCACAACCGAACATGTGGATAAAGTTATGAAGGTTTGGACAACATTTTTAGAACCCATGCTTTGTGTTCCTTCTCGGCCCCAGGGTGCTGAGGATACAGAAGATGTTGTCAAGGCTAAGAATAATTATGTCAAAAATGGCACTGCAAGTGTTGCTGAAAGTGATGATAGCCCTGTTGTTGGTGTTACCATGATGAATCCAAAGCATATAAATGTTTCCAGAAATGGGGATGAGTGTATGCCATTAGATCAATCAACTTCTAGTAAAGCATGGCAATCCAATGGTGATAGTGGGGTTAGAGAGGATAGGTATCTTGATGACCGTGCATTGCGTAAAACTGAATCTTTGGGCAGTAATGCACAGCATTGTAAAATGACTAGTATTGCACTCACACCTGATGAACTATCAGGATTTAATAATAAGCAAGACCAGTCCAGCGAACGGTTAGTGAATGCTAATGTCTCACCAGCATCTGGAATGGAGCAAAGCAATGGAAGGACAAACATAGACAATTTGTCAGGACTCACTGCCACTCCATCTAGACCTGGTAATGTTTCTGTTGAGGGAGGACTTGATATACTGTCATCAGAGGGTGGTGATTCTACAAGACCAGGTACATCCACAAATGGGGCCATCACTGGAGGCACCAAAGTTCACCGATACCAAGAGGAATCAGTTCGACCCTTCAAAAGTGAAAGAGAAGAGGGTGAGTTATCTCCTAATGGAGACTTTGAAGAAGATAACTTAGCAGTTTATGGAGGTAATGGTTTGGATGCAGTGCATAAAGGAAAGGATGGTGGTGTGAGTCGGCAATACCAAAATAGACACGGGGAAGAAGTTTGTGGTGAAACCAGAGGAGAAAACGATGCTGATGCTGATGATGAAGGTGAAGAAAGCCCTCACAGGTCATCAGAGGACAGTGAAAATGCATCTGAAAATGTTGATGTTTCTGGAAGCGAGTCTGCTGATGGTGAGGAGTGTTCTCGAGAAGAGCACGAGGATGGGGAACATGATAACAAGGCTGAGAGTGAAGGTGAAGCTGAAGGAATAGCTGATGCCCATGATGTTGAAGGAGATGGAATGTCATTGCCATATTCTGAACGCTTTCTACTAACTGTGAAGCCTCTCGCAAAGCATGTTCCTCCAATGTTACATGAGAAGGACAAGAATTCACGAGTTTTCTATGGAAATGATTCCTTTTATGTGTTGCTTAGACTTCATCAGACATTGTATGAGAGGATACAATCAGCAAAGATTAACTCATCATCTGCTGATAGGAAATGGAAGGCTTCAAGTGATACAAGCTCCACTGATCAATATGACAGGTTCATGAATGCCCTTTACAATTTGCTGGATGGTTCTTCTGATAATACAAAATTTGAGGATGATTGTCGGGCTACAATTGGAACTCAATCATATGTCTTATTCACATTAGACAAGCTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCTGCTGATGAGATGGATAATAAGCTTCTACAACTATATGCATATGAGAAATCAAGAAAACCTGGAAAATTTGTCGATGTAGTTTATCATGAAAATGCCCGTGTTCTTCTCCATGATGAGAACATATATCGTATTGAATATTCACCTGGACCAATGAAACTGTCTATTCAACTGATGGACTCTGGACACGATAAACCTGAAGTGACTGCTGTGTCAGTGGACCCTAATTTTTCAACCTATCTACACAATGACTTCCTGTCTGTTGTCCCTGACAAAAAGGAGAAATCAGGAATTTTCTTGAAGAGGAATAAACATAGATATGCTGGTAATGATGAATTTTCAAGCCAGGCTATGGAAGGACTACAAATTATTAATGGTCTGGAATGTAAGATAGCTTGCAGTTCATCTAAGATACTGAAGACTTCTTGTTtcggaagagaagaaaaagaagacccTTGCGTCCGAAGAGTTCATCCCATGAACAGGCACAGTCTTCAAACATTTGTTCAAGCAGAGTACACCGATTCCGCAAATTGTTTTCCATTACATGAAAGTGTCCATTCTGAGCTCGGCATGGCATGTAGTATTTCTCATACGTCATGGCAGAGGCGCCAGATGAAAACGGCATCCTATCCAAGAAGTTGA 4374 0.4026 MKRSRDEVFTSCSQLKRPVVSSRGEASGQPQMLNGGSQKLTTNDALAYLKAVKDIFQDKRDKYDDFLEVMKDFKAQRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEITLPSEDEQPPQKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNLYRKENKSITEVYHEVAAIFQDHPDLLDEFTHFLPDASAAASAHYASARNSMLRDRSSAMPTVRQMHVEKRERTMVSHGDRDPSVDCPDPDHDRGLLRVEKEQRRRVEKEKEHREDRDKRERERDDRDYEHDGGRDRERFSHKRSRKAEDSGAEPLVDADENFGTRPMSSTCDDKDSLKSMYSQEFAFCEKVKEKLQNPDDYQEFLKCLHIYSREIITRQELQSLVGDLLGKYPDLMEGFNEFLLQSEKNDGGFLAGVMNKKSLWNDGHGLKQMKAEDRNRDRDRDRDRYRDDAMKERDREFRERDKSTVIANKDVLGPKMSLYPSKDKYLSKPINELDLSNCDQCTPSYRLLPKNYPIPVASQKTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLDKINNNTIKGDSPIRIEEHLTAINLRCIERLYGDHGLDVMEVLRKNAPLALPVILTRLKQKQEEWARCRADFSKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALIAEIKEISEKKRKEDDVLLAIAAGNRRPILPNLEFKFSDPDIHEDLYQLIKYSCGEICTTEHVDKVMKVWTTFLEPMLCVPSRPQGAEDTEDVVKAKNNYVKNGTASVAESDDSPVVGVTMMNPKHINVSRNGDECMPLDQSTSSKAWQSNGDSGVREDRYLDDRALRKTESLGSNAQHCKMTSIALTPDELSGFNNKQDQSSERLVNANVSPASGMEQSNGRTNIDNLSGLTATPSRPGNVSVEGGLDILSSEGGDSTRPGTSTNGAITGGTKVHRYQEESVRPFKSEREEGELSPNGDFEEDNLAVYGGNGLDAVHKGKDGGVSRQYQNRHGEEVCGETRGENDADADDEGEESPHRSSEDSENASENVDVSGSESADGEECSREEHEDGEHDNKAESEGEAEGIADAHDVEGDGMSLPYSERFLLTVKPLAKHVPPMLHEKDKNSRVFYGNDSFYVLLRLHQTLYERIQSAKINSSSADRKWKASSDTSSTDQYDRFMNALYNLLDGSSDNTKFEDDCRATIGTQSYVLFTLDKLIYKLVKQLQAVAADEMDNKLLQLYAYEKSRKPGKFVDVVYHENARVLLHDENIYRIEYSPGPMKLSIQLMDSGHDKPEVTAVSVDPNFSTYLHNDFLSVVPDKKEKSGIFLKRNKHRYAGNDEFSSQAMEGLQIINGLECKIACSSSKILKTSCFGREEKEDPCVRRVHPMNRHSLQTFVQAEYTDSANCFPLHESVHSELGMACSISHTSWQRRQMKTASYPRS 1457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1688 1457 MobiDBLite consensus disorder prediction 1046 1060 - -
Ssu2g1688 1457 MobiDBLite consensus disorder prediction 1013 1098 - -
Ssu2g1688 1457 MobiDBLite consensus disorder prediction 1014 1038 - -
Ssu2g1688 1457 Coils Coil 254 276 - -
Ssu2g1688 1457 MobiDBLite consensus disorder prediction 829 846 - -
Ssu2g1688 1457 SMART hdac_interact2seq4b 499 599 IPR013194 -
Ssu2g1688 1457 MobiDBLite consensus disorder prediction 226 333 - -
Ssu2g1688 1457 MobiDBLite consensus disorder prediction 428 458 - -
Ssu2g1688 1457 ProSiteProfiles PAH domain profile. 124 194 IPR003822 GO:0006355
Ssu2g1688 1457 Pfam Sin3 family co-repressor 502 593 IPR013194 -
Ssu2g1688 1457 Gene3D Paired amphipathic helix 333 405 IPR036600 GO:0006355
Ssu2g1688 1457 MobiDBLite consensus disorder prediction 906 1001 - -
Ssu2g1688 1457 ProSiteProfiles PAH domain profile. 335 404 IPR003822 GO:0006355
Ssu2g1688 1457 Pfam C-terminal domain of Sin3a protein 1145 1381 IPR031693 -
Ssu2g1688 1457 Pfam Paired amphipathic helix repeat 61 105 IPR003822 GO:0006355
Ssu2g1688 1457 Pfam Paired amphipathic helix repeat 357 401 IPR003822 GO:0006355
Ssu2g1688 1457 Pfam Paired amphipathic helix repeat 147 191 IPR003822 GO:0006355
Ssu2g1688 1457 SUPERFAMILY PAH2 domain 120 193 IPR036600 GO:0006355
Ssu2g1688 1457 MobiDBLite consensus disorder prediction 1073 1098 - -
Ssu2g1688 1457 MobiDBLite consensus disorder prediction 226 311 - -
Ssu2g1688 1457 MobiDBLite consensus disorder prediction 950 966 - -
Ssu2g1688 1457 MobiDBLite consensus disorder prediction 823 854 - -
Ssu2g1688 1457 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 5 1382 - -
Ssu2g1688 1457 MobiDBLite consensus disorder prediction 906 934 - -
Ssu2g1688 1457 Gene3D Paired amphipathic helix 44 106 IPR036600 GO:0006355
Ssu2g1688 1457 Gene3D Paired amphipathic helix 122 195 IPR036600 GO:0006355
Ssu2g1688 1457 ProSiteProfiles PAH domain profile. 38 108 IPR003822 GO:0006355
Ssu2g1688 1457 SUPERFAMILY PAH2 domain 334 401 IPR036600 GO:0006355
Ssu2g1688 1457 PANTHER SIN3B-RELATED 5 1382 IPR039774 GO:0003714
Ssu2g1688 1457 SUPERFAMILY PAH2 domain 37 107 IPR036600 GO:0006355
Ssu2g1688 1457 MobiDBLite consensus disorder prediction 427 458 - -
Ssu2g1688 1457 MobiDBLite consensus disorder prediction 971 989 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1688 Ssu-Chr2 66125525 66137054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1688 29 143 WRKY Transcription Factor Family AT4G12020 49.573 4.45e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu2g1688 Sin3a_C 2.1e-56 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1688 K11644 - gmx:100811928 2472.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1688 2 66125525 66137054 Ssu2g1688 2 66125525 66137054 ECH
Ssu2g1688 2 66125525 66137054 Ssu5g1002 5 31860575 31872996 PCT