Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1684 ATGTCTCGCACGTGCTCACAGTGCGGCAACAACGGCCACAACTCACGGACATGCACCGACGGTGGCGCCGCCGCTTCCGGCGGCGGGTCTCCCAGGGAGAACGGCATCATGCTGTTCGGCGTGCGAGTCACGGAGGATAACTCGTCGTTCAGGAAGAGCGCTAGCATGAACAACCTCTCCCAGTACGACCCGGACTCCAACCCCGCCGACGCCGGCTACGCCTCCGACGACGTCGTTCACGCCTCCGGCCGCACACGCGAGCGCAAGCGAGGTGTTCCTTGGACGGAGGAAGAGCATAGGTTGTTCCTCTTAGGGTTACACAAAGTCGGGAAAGGAGATTGGAGAGGAATTTCTCGAAACTTCGTGAAAACTCGCACACCAACTCAAGTCGCTAGTCATGCTCAGAAGTACTTCCTCCGCCGCCACAACCAGAACCGCCGGCGCCGGAGATCTAGCCTTTTCGACATCACCACCGATAcgGTGATGGAATCTTCTACTATAATGGAAGAAGAACTAGCTCAGCAGGAAACGGTGGCGGCGCCTAGCCCCGCCGCATATCCGCCGTCACATTACGGTTGTTTTCCCGGGGCGGGTTTTCCGATGAGTTTGACTCCGGTGGTGTTGCCGGTGAGTGGTGACAGACTAGCCAAGCCGATCAGGCCGACGCCGATTTTGCCGGTGCCTCCGTCTTCGAAGATGGCTAATTTGAACCTGAAAGAGAAGGCTTCTCCGACTAATCTCATTGAGCCTTTACCGTTGTCGTTGAATctgccgccgccgccgccgccgcggTCTCAGGATCAGTCGCCGGCAAGTAGTGGCCACTCGTCGCCGCCGTCGTCGTCGTCATCGGCGGCAGCTTTTCAGGCTATGTCTGCAGGGAAGTTCGGCGGTGGTGGGGATAGTATTATCAGCGTTGCTTGA 924 0.5606 MSRTCSQCGNNGHNSRTCTDGGAAASGGGSPRENGIMLFGVRVTEDNSSFRKSASMNNLSQYDPDSNPADAGYASDDVVHASGRTRERKRGVPWTEEEHRLFLLGLHKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHNQNRRRRRSSLFDITTDTVMESSTIMEEELAQQETVAAPSPAAYPPSHYGCFPGAGFPMSLTPVVLPVSGDRLAKPIRPTPILPVPPSSKMANLNLKEKASPTNLIEPLPLSLNLPPPPPPRSQDQSPASSGHSSPPSSSSSAAAFQAMSAGKFGGGGDSIISVA 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1684 307 Gene3D - 92 143 - -
Ssu2g1684 307 PANTHER TRANSCRIPTION FACTOR KUA1 1 304 - -
Ssu2g1684 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 142 IPR017930 -
Ssu2g1684 307 ProSiteProfiles SANT domain profile. 89 142 IPR017884 -
Ssu2g1684 307 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 89 140 IPR006447 GO:0003677
Ssu2g1684 307 MobiDBLite consensus disorder prediction 249 287 - -
Ssu2g1684 307 MobiDBLite consensus disorder prediction 1 33 - -
Ssu2g1684 307 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE 1 304 - -
Ssu2g1684 307 SMART sant 90 140 IPR001005 -
Ssu2g1684 307 ProSiteProfiles Zinc finger CCHC-type profile. 5 20 IPR001878 GO:0003676|GO:0008270
Ssu2g1684 307 MobiDBLite consensus disorder prediction 55 91 - -
Ssu2g1684 307 Pfam Myb-like DNA-binding domain 93 138 IPR001005 -
Ssu2g1684 307 MobiDBLite consensus disorder prediction 268 287 - -
Ssu2g1684 307 MobiDBLite consensus disorder prediction 1 21 - -
Ssu2g1684 307 CDD SANT 93 138 IPR001005 -
Ssu2g1684 307 SUPERFAMILY Homeodomain-like 88 141 IPR009057 -
Ssu2g1684 307 MobiDBLite consensus disorder prediction 253 267 - -
Ssu2g1684 307 ProSiteProfiles Myb-like domain profile. 86 138 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1684 Ssu-Chr2 66018243 66019522 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu2g1684 Myb_DNA-binding 3.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1684 - - gmx:778178 446.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1684 2 66018243 66019522 Ssu2g1684 2 66018243 66019522 ECH