Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1680 ATGCAGGACCCACAAGTGAAGCTGAAGGCAACTGAGGGACACCCACCTTTCATCCTTCACCCTTCTTCATTCATTGCCCACGAAAGAAGTCACCAAATTCCACTCCACACATCTTCCAACGACTTCACTTTACTTCAACCACAGGGTTTTACTTTCCGACTCTGTTTGTTCCCCTCTCCAATGACGCCGGAAAGTGACGTCACGCCGTCGTCCTTCAGGCTCCGCTGGGACGTGTTCCTGAGCTTCAGGGGCACCGACACGCGCCGCACCATCACGAAGGACCTCTACGACGCGCTCCACACGCGCGGCGTTCGGGTCTTCCGGGACGACGACGGCCTGGAGCGCGGCGACGAGATCCAGAAGAAGCTTCTGGAAGCCATCGAGGACTCTGCAGCCTCGGTCATCGTTCTCTCTCCGGATTACGCGTCTTCGCACTGGTGCCTGGAGGAGCTGGCCAAGATTTGCGAGTGCGGGAGGCTGATCCTCCCCGTGTTCTACTGGGTCGACCCGTCCGACGTCAGAAAGCAGAAGGGTCCCTTCGAGCAGTCCTTCGTGTCCCATGCAAACAGGTTTCCTCAAGAGAGTGTCCGGCAGTGGAGGGATGCCATGAAAAAAGTGGGGGGAATCGCTGGTTACGTTTTGGCTGAGAAAAGtgATAGAGGTGAGAGTAATAAGCTCGTTCAGGTTTTGGTGCAAACGCTTTTGAAGCAGCTGAGGAATACACCACTGAGTGTGGCTCCGTATACAGTTGGGCTGGAGGAAAGAGTTGAAGAGCTGAAAAAGCTGTTAGATGTAAAATCCAACGACGCAAGGGTTTTGGGGTTGTATGGGATGGGTGGGGTTGGTAAGACAACCCTAGCCAAGAGCCTCTTCAACAGCCTTGTTGTTCATAATTTTGAGCGACGCAGTTTCATTCCAAATGTTAGATCTCAAGTCTCCAAACACGATGGTTTGGTTTCTcttcaaaacataattcttGGTGACCTTTCCCATGGTGGAAAAGAGGGTCTAATCAATGATGCTAATGATGGCATTTCAGCTATCCAAAGAATAGTACAAGAGAATAGAGTGCTGTTGATCTTGGATGATGTTGGTGATGTGCAGCAGCTTAATTTTTTGATGGGTAAGAGGGAATGGTTTTACAAAGGTAGCCGTGTTGTAATAACCACAAGGGATAGAGAAGTTTTGCCTGAGAGTTATGTTGACGTGCACTATGAGGTGAAGGAATTGAAATTCTCTCCAGCAATGGAGTTGTTTTGCTACCATGCAATGAGAAGAAAGGAACCTGCAGAAGGTTTTTTGGATCTTTCAAACCAAATTGTGGAGAAGACAGGAGGGTTGCCTTTGGCTTTGGAAGTTTTTGGGTCTTTTCTGTTTGACAAGAGGACGATGAGGGAATGGAAAGATGCTGTGGAGAAGCTGAAGCAGATTCGTCCTGCGTGTCTGCAGGATGTGCTGAAAATAAGTTTTGATGCGTTGGATGAACAAGAGCAGTGTGTGTTCCTTGACATTGCTTGTTTGTTTGTGCAAATGGAAATGAAGAGAGAAGATGTGGTTGATATATTGAATGGCTGTAATTTTAGAGGAGAGATAGCACTGACTGTACTCACTGCAAGATGTCTAATTAAAGTCACTGGTGATGGTAACCTGTGGATGCATGATCAAGTTAGAGACATGGGAAGGCAAATTGTGCATAGTGAAAACCTTGCAGATCCTGGTCTACGTAGCAGGCTCTGGGATCGTGGTGAAATCTTGACTGTCTTGAAGAGTATGAAGGGAACAAGAAATGTTCAAGGGATTGTCCTAGATTGTGTCAAGAGAAGAATGTCTACTCCTGAAGATCGCTCTGCTGATGAAATTACTTGGGAAAACTTTCGACATAAGCCCAGTTGTAAATCTgcattagaatatattaaagagAAGTATAAAAAGTATGTGCGGGATAAAGAAGAGAAAGCAAAAGAGGTTGTACTTCAGACAAAGCACTTTAAATTAATGGTTTCCTTAAGATTGCTTCAAGTTAATTATTCGAGATTGGAAGGACAATTCAAATGCCTTCCCCAAGGGCTGAAGTGGTTACAATGGAAACAATGTCCATTAAGGTATATGCCTTCTGACTATAATCCTTTGGAACTTGCTGTGATGGATCTCTCGGAAAGTAAGATTGAAACGGTGTGGGGTGGAGGCAGTAACAAGGTGGCTGAGCACTTAATGGTTTTAAACCTCTCCAGTTGCCACCATTTGACAGCAACTCCTGATTTAACTGGGTATCTatgtcttaaaaaaattgttttgaaagaaTGTTCTCATTTAACTAGGATTCATGAATCACTTGGAAATCTAAGTTCCTTAGTTCACTTGAACTTGCACTTTTGCTATAGCCTTATGGAACTACCTAGTGATGTCTCTGGGCTGAAACATCTCGAGGACCTTACTCTTTCCGAATGCTGGAAATTGAATGCATTACCGAAAGACTTAAGCTGCGTGGTTTCTTTAAGACAACTTCTTCTTGATAGCACTGCTATAACTGAGCTACCTGAGTCCATCTTCCACCTGACAAAACTTGAAAAGCTGAGTGCAAATAGATGCCACTCTCTGAAGAGGTTACCTACCAGTATTGGGAAACTCTGCTCCCTGCAAGAATTGTCACTCAACCACACAGCATTGGAGGAATTGCCAGATTCTGTTGGTTCTTTGGAAAAACTTGAGAAGCTTAGTTTGATGGGGTGTAAGTCACTCTCAGTGATTCCTGACTCAACTAGGAAACTAATTTCAATGACTCAATTATTTTTGGACGTCAGTGGAGTTAAAGAATTGCCTGCTTCTATTGGTTCCTTATCATATTTAAGGAAATTGTCTGTTGGAGGCTGTAATTTTCTTGAGAAATTGCCTGCGTCAATAGGAACTTTAGTTTCTATTGTTGAGCTTCGGTTAGATGGGACAAAAATTACCAATTTGCCAGATTTTGCGGCCATGAAAATGCTAGAAAAGCTTGAGATGAGCAAATGTCAGCATCTCAGGTTTCTGCCAGTATCATTTGGCTGCCTGTCAGCTCTTACCAGTTTGGACATGCATGAGACAAAAATTACTGAATTGCCAGAATCAATAGGAATGTTGGAAAATCTTATTCGGTTGAGGTTAGACATGTGCAAACAGCTCCAAAGCCTTCCAGCCTCTATTGGAAATTTGAAATCTTTGAGATGGCTAAGGATGAAGGAAACAGCACATACACATCTACCTGATAGCTTTGGGATGCTTGCAAGCCTGATAGAACTAGACATTGAAAGAAGGCCCTATCTTAATGTGGCTGGAAACAACATGCCTACCGGGGTCATAATTCCTAACAAACAAGAACCTAATTCAGAGGCAATATTAACTTCTTTTTGCAGTCTAATCTTGCTGGAAAAGCTAAATGCTCATGGATGGGGAATAAATGGAAAAATTCCAGATGACTTTGAAAAGCTGTCATCGCTAGAAACTTTAAGTTTTGGTCACAACAATATTTGCAGTCTTCCAGCCAGCATGACAGGTCTCTCCTATCTCAAAAAGCTTTTGTTATCAGAATGCAGGGAGCTCGTGTTTCTGCCTCCTCTTCCCTCTCGCCTAGAAGAGCTTAATCTTGCAAACTGTATTGCAGTACACCACATACATGATATTTCAAACTTGGAGCGCTTAGAGGAGTTGAACCTTACAAATTGTGAACAGGTGGTGGATATACCAGGTCTTGAACATTTGAAGTCCTTAAGAAGGTTGTACATGAGTGGTTGCATTGGATGCTCCCTTGCCGTAAAGAGAAGATTTTCCAAGGttctacttaaaaaattagagattttgATTATGCCTGGAAGCAGAGTCCCGGATTGGTTTACAGCAGAACCAGTTGTCTTCTCCAAGCGAATAAACCGTGAGCTTAAAGGTGTCATTTGTTTCGGTGTTCTCTCTTTCAACAATATACCTGAAAACCAAAGAGAAAGACTGCAGTTAGTGGATGTTCAAGGAAAAATCTTCAATCTGACCGATAATGTATATAGCACAACATTTCGCCTGCTTGGAGTACCTAGGACAAATGAAGACCACATCTTTTTGCGCAGATTTGGAGTTCGGTCTGCATTTGTTTCCCAGTTAAAAGATGGATATACCTTACATTTGAAAAGGCGAAACCCGCCTTTTATTGAGGGGTTGGAGCTGAAGAACTGCAGAATCCATTTAGTTTTTGAAGGTGACGATGATTATGAGGGAGATGAAGGATCGCTAGATGAAAGTCAGTACTCTGTTTCACAGAAATTAGCCAAGTTCTTCAACTTTGCTGCAGATGATCCATGTGTGTGA 4329 0.4287 MQDPQVKLKATEGHPPFILHPSSFIAHERSHQIPLHTSSNDFTLLQPQGFTFRLCLFPSPMTPESDVTPSSFRLRWDVFLSFRGTDTRRTITKDLYDALHTRGVRVFRDDDGLERGDEIQKKLLEAIEDSAASVIVLSPDYASSHWCLEELAKICECGRLILPVFYWVDPSDVRKQKGPFEQSFVSHANRFPQESVRQWRDAMKKVGGIAGYVLAEKSDRGESNKLVQVLVQTLLKQLRNTPLSVAPYTVGLEERVEELKKLLDVKSNDARVLGLYGMGGVGKTTLAKSLFNSLVVHNFERRSFIPNVRSQVSKHDGLVSLQNIILGDLSHGGKEGLINDANDGISAIQRIVQENRVLLILDDVGDVQQLNFLMGKREWFYKGSRVVITTRDREVLPESYVDVHYEVKELKFSPAMELFCYHAMRRKEPAEGFLDLSNQIVEKTGGLPLALEVFGSFLFDKRTMREWKDAVEKLKQIRPACLQDVLKISFDALDEQEQCVFLDIACLFVQMEMKREDVVDILNGCNFRGEIALTVLTARCLIKVTGDGNLWMHDQVRDMGRQIVHSENLADPGLRSRLWDRGEILTVLKSMKGTRNVQGIVLDCVKRRMSTPEDRSADEITWENFRHKPSCKSALEYIKEKYKKYVRDKEEKAKEVVLQTKHFKLMVSLRLLQVNYSRLEGQFKCLPQGLKWLQWKQCPLRYMPSDYNPLELAVMDLSESKIETVWGGGSNKVAEHLMVLNLSSCHHLTATPDLTGYLCLKKIVLKECSHLTRIHESLGNLSSLVHLNLHFCYSLMELPSDVSGLKHLEDLTLSECWKLNALPKDLSCVVSLRQLLLDSTAITELPESIFHLTKLEKLSANRCHSLKRLPTSIGKLCSLQELSLNHTALEELPDSVGSLEKLEKLSLMGCKSLSVIPDSTRKLISMTQLFLDVSGVKELPASIGSLSYLRKLSVGGCNFLEKLPASIGTLVSIVELRLDGTKITNLPDFAAMKMLEKLEMSKCQHLRFLPVSFGCLSALTSLDMHETKITELPESIGMLENLIRLRLDMCKQLQSLPASIGNLKSLRWLRMKETAHTHLPDSFGMLASLIELDIERRPYLNVAGNNMPTGVIIPNKQEPNSEAILTSFCSLILLEKLNAHGWGINGKIPDDFEKLSSLETLSFGHNNICSLPASMTGLSYLKKLLLSECRELVFLPPLPSRLEELNLANCIAVHHIHDISNLERLEELNLTNCEQVVDIPGLEHLKSLRRLYMSGCIGCSLAVKRRFSKVLLKKLEILIMPGSRVPDWFTAEPVVFSKRINRELKGVICFGVLSFNNIPENQRERLQLVDVQGKIFNLTDNVYSTTFRLLGVPRTNEDHIFLRRFGVRSAFVSQLKDGYTLHLKRRNPPFIEGLELKNCRIHLVFEGDDDYEGDEGSLDESQYSVSQKLAKFFNFAADDPCV 1442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1680 1442 Gene3D - 74 236 IPR035897 -
Ssu2g1680 1442 SMART LRR_typ_2 1155 1178 IPR003591 -
Ssu2g1680 1442 SMART LRR_typ_2 781 805 IPR003591 -
Ssu2g1680 1442 SMART LRR_typ_2 829 852 IPR003591 -
Ssu2g1680 1442 SMART LRR_typ_2 876 899 IPR003591 -
Ssu2g1680 1442 SMART LRR_typ_2 1016 1039 IPR003591 -
Ssu2g1680 1442 SMART LRR_typ_2 970 993 IPR003591 -
Ssu2g1680 1442 Gene3D Ribonuclease Inhibitor 628 817 IPR032675 -
Ssu2g1680 1442 SUPERFAMILY Toll/Interleukin receptor TIR domain 71 212 IPR035897 -
Ssu2g1680 1442 PANTHER TMV RESISTANCE PROTEIN N-LIKE 73 1391 - -
Ssu2g1680 1442 SUPERFAMILY L domain-like 552 1004 - -
Ssu2g1680 1442 Gene3D Ribonuclease Inhibitor 818 912 IPR032675 -
Ssu2g1680 1442 CDD AAA 250 397 - -
Ssu2g1680 1442 Gene3D - 410 494 IPR042197 -
Ssu2g1680 1442 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 238 504 IPR027417 -
Ssu2g1680 1442 Pfam NB-ARC domain 253 477 IPR002182 GO:0043531
Ssu2g1680 1442 Gene3D - 237 404 IPR027417 -
Ssu2g1680 1442 PRINTS Disease resistance protein signature 351 365 - -
Ssu2g1680 1442 PRINTS Disease resistance protein signature 272 287 - -
Ssu2g1680 1442 PRINTS Disease resistance protein signature 444 458 - -
Ssu2g1680 1442 PRINTS Disease resistance protein signature 897 913 - -
Ssu2g1680 1442 ProSiteProfiles TIR domain profile. 74 238 IPR000157 GO:0007165
Ssu2g1680 1442 Pfam TIR domain 76 242 IPR000157 GO:0007165
Ssu2g1680 1442 Gene3D Ribonuclease Inhibitor 1115 1291 IPR032675 -
Ssu2g1680 1442 Gene3D Ribonuclease Inhibitor 913 1113 IPR032675 -
Ssu2g1680 1442 SUPERFAMILY L domain-like 958 1282 - -
Ssu2g1680 1442 SMART till_3 75 209 IPR000157 GO:0007165
Ssu2g1680 1442 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 73 1391 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1680 Ssu-Chr2 65908428 65916809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1680 76 952 WRKY Transcription Factor Family AT4G12020 27.821 6.97e-76 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1680 - - gmx:100784137 2323.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1680 2 65908428 65916809 Ssu2g1680 2 65908428 65916809 ECH