Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1678 ATGGATCCGGCGGCCATGATGAACGGCGGCGCCAACACGACGTCGTATCACATATCAGAGATCTGGCCGTTTCCGCCTCCGAATGCGGCAGAGCCCGGTTGCGGATTGGGCCTGAGGAGGCCTCAGTTCGGACACGGGTTCGGGGACTTCGCCCCGGGCCCGGCCCTAGACGACCCGGCGAGCATTGGCCACAAGAAGAGGCACGACGCAGAGGAGGAATCGGCTAAGGGCGTCTCCACCAGCAATGGCGTGAACGAGGGTGGTGATGGGAAACGGGTTAAGACAACGGGGAACAAGAGCGAGAGTGGGAAAGGTGAAGCAGAAGACAGTTCAGGAAAGCCTGCGGAGCAAGGTGGTAAGCCACCTTCGGAGCCTCCTAAGCAAGACTACATTCATGTCCGAGCCAGAAGGGGTCAAGCTACTGATAGCCACAGTCTTGCAGAAAGAGCTAGACGGGAAAAGATTAGTGACAGGATGAAAATTCTTCAGGATTTAGTCCCGGGTTGTAATAAGGTTATTGGGAAAGCATTGGTCCTTGatgagataattaattatatccaaTCTCTTCAGCGTCAAGTAGAGTTTTTGTCAATGAAGCTTGAAGCAGTAAATTCAAGAATGACACCCGGAATTGAAGTGTTTCCTCCTAAAGATTTTGATCAGCAAACATTTGATACAACTGGCCTGCCATTCGCTTCTCAAGCTACAAGAGAGTATAACCGAGGTTCATCACCAGAGTGGTTACACATGCAGGTGGGAAGTGCTTTTGATAGAGCAACGTAG 783 0.5083 MDPAAMMNGGANTTSYHISEIWPFPPPNAAEPGCGLGLRRPQFGHGFGDFAPGPALDDPASIGHKKRHDAEEESAKGVSTSNGVNEGGDGKRVKTTGNKSESGKGEAEDSSGKPAEQGGKPPSEPPKQDYIHVRARRGQATDSHSLAERARREKISDRMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMTPGIEVFPPKDFDQQTFDTTGLPFASQATREYNRGSSPEWLHMQVGSAFDRAT 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1678 260 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 139 189 IPR011598 GO:0046983
Ssu2g1678 260 MobiDBLite consensus disorder prediction 60 75 - -
Ssu2g1678 260 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 137 208 IPR036638 GO:0046983
Ssu2g1678 260 Coils Coil 186 206 - -
Ssu2g1678 260 Gene3D - 136 209 IPR036638 GO:0046983
Ssu2g1678 260 MobiDBLite consensus disorder prediction 92 113 - -
Ssu2g1678 260 Pfam Helix-loop-helix DNA-binding domain 143 190 IPR011598 GO:0046983
Ssu2g1678 260 PANTHER BNAC05G07950D PROTEIN 1 260 - -
Ssu2g1678 260 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 260 IPR024097 GO:0006355
Ssu2g1678 260 CDD bHLH_AtBPE_like 129 214 - -
Ssu2g1678 260 MobiDBLite consensus disorder prediction 28 128 - -
Ssu2g1678 260 SMART finulus 145 195 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1678 Ssu-Chr2 65892226 65895078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1678 1 218 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 58.798 2.31e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu2g1678 HLH 9.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1678 - - gmx:100794893 423.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1678 2 65892226 65895078 Ssu2g1678 2 65892226 65895078 ECH
Ssu2g1678 2 65892226 65895078 Ssu5g1205 5 39633506 39636146 PCT