Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1651 ATGAGTCGCAAGAGAGACAAGCCCTACTTTTCCCGCCACGACGCGGCCAAGCGCCGCCGCCCCTTGCCGGAGCCCGCGGAGGAGGAGAGACCCGCGCCGAGGCCGGCGCCGCCGTCCGCGGTGGTCGTGATGGGCCTGCCCCAAGACTGCTCCGTCCTCGATCTCAAGTCCCGATTCGAGATCTACGGCGCCATCTCCCGCATCCGCATCGACCGCGACGCCGTCGGCTACATCACCTACCGGACCAAGGGCTCCGCCGACGCCGCCATCGCCGCCGGCCTCGACCCCTCCTTCGGAATCACCGTTAACTCCAAAAAGGTTCAGGTGTTGTGGGCAACGGACCCTCTAGCCATGTGGAGGGAAGGAGTTGGTAATAGCAAGGATAAAGGGTCTATGTCAAAGCTTGTGCGTGCTGAGGTACCTTTGAGCAAGCATGGGAGAGGTAATAGACTCGCTTCAGCTATAGGGAATACCAAACATAGCGAGGATAGTTCAGGTAGCTCAGTTTTAGAAGTGCCTTTCAAGGGCAGAGAAATTGTTGCTTATGATGATATCCTCTAA 561 0.5865 MSRKRDKPYFSRHDAAKRRRPLPEPAEEERPAPRPAPPSAVVVMGLPQDCSVLDLKSRFEIYGAISRIRIDRDAVGYITYRTKGSADAAIAAGLDPSFGITVNSKKVQVLWATDPLAMWREGVGNSKDKGSMSKLVRAEVPLSKHGRGNRLASAIGNTKHSEDSSGSSVLEVPFKGREIVAYDDIL 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1651 186 MobiDBLite consensus disorder prediction 7 31 - -
Ssu2g1651 186 SUPERFAMILY RNA-binding domain, RBD 26 120 IPR035979 GO:0003676
Ssu2g1651 186 SMART rrm1_1 40 110 IPR000504 GO:0003723
Ssu2g1651 186 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 91 IPR000504 GO:0003723
Ssu2g1651 186 Gene3D - 1 116 IPR012677 -
Ssu2g1651 186 MobiDBLite consensus disorder prediction 1 39 - -
Ssu2g1651 186 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 114 IPR000504 GO:0003723
Ssu2g1651 186 CDD RRM_SF 41 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1651 Ssu-Chr2 65429730 65431358 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1651 1 186 Homeobox Transcription Factor Family AT1G27050 53.171 1.13e-60 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1651 - - gmx:106797175 302.367
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1651 2 65429730 65431358 Ssu2g1651 2 65429730 65431358 ECH