Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1647 ATGACGGAGCTGCGCGCGGCAATTGAGCGATCCTTCGACTACCGCTACTCGCGCCACGCGCGCGAGGCGCTTGACGAGTTGCCTGACAGCTTCACCATCACCGACCCCTCCATCCCGGGCCACCCCATCGTCTTCGCCAGCCCGGGCTTCCTCAAGATGACGGGCTACGCGCGCCGCGAGGTCGTGGGCCAGAGCGCCGCCATGTTCCAGGGCCCGCGGACCTCCAGGAGGCCCGTCGTGGAGATCCGCGAGGCCGTCCGAGAGGAGCGGGACGCGCAGGTCGTTCTGCTGAACTACCGCAAGGACGGCACGCCGTTTTGGATGCTGTTTCGCGTTTGCCCCGTTTTTAGCAGCGACGCCGGTGCTGTTGTACACTTTGTTGCCGTTCAGGTGCCGCTTCAGAAAAAGGAGGGCTCCGGTGTGAGGGATTTCGGGTTCGGGTGCTGTCGGAAGGAAGTGTGCGCCGATTCGTTATCGGAACTTGGTCGCGCTTGTTCCTTCGAGCAAGTGCTGGAACGTGATCTCAGAGAATTGGAGAGAGAGGAGCCATGTGAGGCGAGTGATGATGAGAAGCGAAGTGCTGTTACTGCTATGGACAACATCTTTTCTGTATTAACACATTATAGTAAGGCGACGGGCAGATTGGTGTGTGGGAAGAGGTGCAGCATTCCTGACGTGGGTCTTTTAAGCACTTCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCGCATTTACCAGACATGCCTATTGTTTATGCTAGTGATGCCTTCTTGAAATTGACAGGTTATGCAAGAGATGAAGTTTTGGGCCGCAACTGTAGATTTTTAGGTGGAACAGATACTGATACCTCGACTTTACATCTGATAAGGGAAAGCATTAAAATTGAACAACCACGCACAGTACGTATTTTGAATTACAGGAAGGACAAAAGCtcattttggaattttcttcaCATCTCACCCGTTCGTGATGCTTCTGGCAAGGTTGCATACTTTGTGGGAGTTCAAATAGAAGATGACTATAAAAACAACGATAGCCAGTGTTTGAGTCCTGAGAAGAGGCAGCTTAGCGTGGTTGGTGTAGTCAAGGTTGCAGTGAGGAGTTTATCAATGACTGCGGGTTCTTCAAAGTCGTAG 1155 0.5134 MTELRAAIERSFDYRYSRHAREALDELPDSFTITDPSIPGHPIVFASPGFLKMTGYARREVVGQSAAMFQGPRTSRRPVVEIREAVREERDAQVVLLNYRKDGTPFWMLFRVCPVFSSDAGAVVHFVAVQVPLQKKEGSGVRDFGFGCCRKEVCADSLSELGRACSFEQVLERDLRELEREEPCEASDDEKRSAVTAMDNIFSVLTHYSKATGRLVCGKRCSIPDVGLLSTSLIISLGRIKQSFVLTNPHLPDMPIVYASDAFLKLTGYARDEVLGRNCRFLGGTDTDTSTLHLIRESIKIEQPRTVRILNYRKDKSSFWNFLHISPVRDASGKVAYFVGVQIEDDYKNNDSQCLSPEKRQLSVVGVVKVAVRSLSMTAGSSKS 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1647 384 SMART pac_2 93 136 IPR001610 -
Ssu2g1647 384 SMART pac_2 306 348 IPR001610 -
Ssu2g1647 384 SMART pas_2 18 87 IPR000014 -
Ssu2g1647 384 SMART pas_2 231 304 IPR000014 -
Ssu2g1647 384 CDD PAS 27 129 IPR000014 -
Ssu2g1647 384 Gene3D PAS domain 14 138 - -
Ssu2g1647 384 CDD PAS 252 341 IPR000014 -
Ssu2g1647 384 SUPERFAMILY PYP-like sensor domain (PAS domain) 246 342 IPR035965 -
Ssu2g1647 384 PANTHER PROTEIN TWIN LOV 1 8 382 - -
Ssu2g1647 384 ProSiteProfiles PAS repeat profile. 256 278 IPR000014 -
Ssu2g1647 384 Gene3D PAS domain 243 381 - -
Ssu2g1647 384 ProSiteProfiles PAS repeat profile. 16 89 IPR000014 -
Ssu2g1647 384 PANTHER PROTEIN TWIN LOV 1 8 382 - -
Ssu2g1647 384 ProSiteProfiles PAC domain profile. 303 357 IPR000700 -
Ssu2g1647 384 TIGRFAM sensory_box: PAS domain S-box protein 21 125 IPR000014 -
Ssu2g1647 384 TIGRFAM sensory_box: PAS domain S-box protein 256 341 IPR000014 -
Ssu2g1647 384 SUPERFAMILY PYP-like sensor domain (PAS domain) 28 130 IPR035965 -
Ssu2g1647 384 Pfam PAS domain 29 130 IPR000014 -
Ssu2g1647 384 Pfam PAS domain 243 342 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1647 Ssu-Chr2 65242262 65246082 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1647 15 344 AGC Kinase Gene Family AT5G58140 33.245 6.39e-62 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1647 - - gmx:100785562 650.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1647 2 65242262 65246082 Ssu2g1647 2 65242262 65246082 ECH