Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1645 ATGGGGTTGGGTGGTGAGAATGGGAAGGTGGTGGAGTCTTGGGATGTGTGTAAAGCAAaggggaggaagaagaagaagaagaagggggaTGAGGAAGTGGACGGGGCTGAGGCTGGGTGTTGGGTTAGGCTGAGGTTCATTGGGAGCTGCATTTCTTCAAGATCCAAGGTTGATAGCTCAGTCAGTGGCAGTGGCACCAGTACTCATTATGCTGAAAGTAAATCGACAAATGATACAAGTAGAGATCAACCAACAGCTCCAGCAGTCTCTTCAACAACCACTAGTAATGCAGAAAGCAATTCATCCACTTCCAAACTTGAAGAAGAGCTTAAAATTGCTTCCAGGCTGCGAAAGTTCTCTTTCAATGATCTTAAGTTAGCAACAAGAAATTTTCGGCCTGAGAGTTTTCTTGGTGAAGGTGGGTTTGGTTGTGTTTTCAAGGGGTGGATTGAAGAAAATGGAACTGCTTCGGTCAAACCTGGCACAGGGCTTACTGTTGCTGTAAAAACCCTCAACCATGACGGGCTCCAGGGTCATAAAGAATGGCTGGCTGAAGTCAATTTTCTTGGTGACCTAGTTCATCCGAACCTTGTTAAACTTGTAGGTTACTGCATTGAAGATGATCAAAGGTTGCTAGTGTATGAGTTCATGCCTCGGGGTAGCCTGGAAAATCACTTATTTAGGAGATCCCTGCCTCTTCCATGGTCCATTAGAATGAAAATTGCACTAGGAGCAGCTAAGGGTCTCGCTTTTCTTCACGAAGAAGCTGAACGACCAGTAATATATAGGGATTTTAAAACTTCGAATATCTTATTAGATGCAGACTACAATGCCAAGCTCTCAGACTTTGGTCTTGCCAAAGATGGTCCAGAAGGTGATAAAACCCATGTGTCTACTCGAGTCATGGGAACCTATGGTTATGCCGCACCAGAATATGTCATGACAGGTCATCTTACATCAAAAAGTGACGTGTACAGTTTTGGAGTGGTACTACTTGAGATGTTGACTGGCAGAAGATCCATGGACAAACACCGACCCAATGGCGAGCATAACCTTGTGGAATGGGCTCGACCACATCTAGGAGAGAGGAGAAGGTTCTACAGGTTGATAGACCCGCGCTTGGAAGGCCACTTTTCGATAAAAGGAGCTCAGAAAGCTACCCAACTGGCTGCTCACTGCCTTAGTAGAGATCCAAAAGCCAGACCCCTAATGAGTGAAGTTGTAGAAGCTTTAAAGCCTTTGCCAAACCTTAAGGACATGGCAAGCTCTTCATATTATTTCCAGGCGATGCAAGCTGACCGCTTTGGAGCGAGCCCGAACACAAGAAATGGGCGAACACAAGGAGCATTGCTCATCCGCAATGGACAGCAGCAAAGGAGCCTTTCAATTTCAATACCAAATGGTACTTATGCATCTCCATATCACCATCAGTTTCCCCAACCTTCACCAAAACCCAGTGGCAAAGCATAG 1470 0.4463 MGLGGENGKVVESWDVCKAKGRKKKKKKGDEEVDGAEAGCWVRLRFIGSCISSRSKVDSSVSGSGTSTHYAESKSTNDTSRDQPTAPAVSSTTTSNAESNSSTSKLEEELKIASRLRKFSFNDLKLATRNFRPESFLGEGGFGCVFKGWIEENGTASVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLVHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKHRPNGEHNLVEWARPHLGERRRFYRLIDPRLEGHFSIKGAQKATQLAAHCLSRDPKARPLMSEVVEALKPLPNLKDMASSSYYFQAMQADRFGASPNTRNGRTQGALLIRNGQQQRSLSISIPNGTYASPYHHQFPQPSPKPSGKA 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1645 489 PANTHER OS01G0588500 PROTEIN-RELATED 62 479 - -
Ssu2g1645 489 Pfam Protein tyrosine and serine/threonine kinase 136 411 IPR001245 GO:0004672|GO:0006468
Ssu2g1645 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Ssu2g1645 489 Gene3D Transferase(Phosphotransferase) domain 1 217 431 - -
Ssu2g1645 489 MobiDBLite consensus disorder prediction 55 104 - -
Ssu2g1645 489 ProSitePatterns Protein kinases ATP-binding region signature. 137 169 IPR017441 GO:0005524
Ssu2g1645 489 CDD STKc_IRAK 137 414 - -
Ssu2g1645 489 SUPERFAMILY Protein kinase-like (PK-like) 109 411 IPR011009 -
Ssu2g1645 489 PANTHER KINASE APK1B, CHLOROPLAST, PUTATIVE-RELATED 62 479 - -
Ssu2g1645 489 ProSiteProfiles Protein kinase domain profile. 131 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1645 489 MobiDBLite consensus disorder prediction 470 489 - -
Ssu2g1645 489 MobiDBLite consensus disorder prediction 55 103 - -
Ssu2g1645 489 Gene3D Phosphorylase Kinase; domain 1 90 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1645 Ssu-Chr2 65182632 65186063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1645 78 411 Glycoside Hydrolase AT3G07070 53.412 2.25e-117 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Ssu2g1645 PK_Tyr_Ser-Thr 2.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1645 - - gmx:100787151 885.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1645 2 65182632 65186063 Ssu2g1645 2 65182632 65186063 ECH