Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1638 ATGGCAAAATTGTGCcacttcttccttttaatctgTTTTGTAGTCATCATACCTACCTTGCATGCCAATGTGAAAGAGGATGACGCGTATTGGCAGAGGAAAACTGAATTGCTTGATCCATATTGGAAGGAAAAAGCAGCAGTTGCTGAAAAATTGAACCAAGAAGCTTATTCAACTGATCCATATGCACTCACCAGCAACCTGACTTACAGTGTTAGCGAGCTCATAGTTGGTGAGCAGAAGGGAAGAAGGAAtttggggggaaaaaaaagtgGTGAATGCATGGCAACAAACCCCATTGACAGGTGCTGGAGGTGTGACCCCAATTGGGCAAACAACCGCAAGAAGCTTGCAGATTGTGTGCAAGGTTTTGGTAGAAACACTGTTGGTGGAAAGAATGGTCCATTCTATGTGGTAACCGACCCTTCAGATAATGACATGGTCAATCCTGTTCCTGGTACCCTTAGGCATGCAGTTACACGAAATGGACCCTTGTGGATCATCTTTGCTCGTAGCATGAAAATTAGGCTCAACCAGGAGCTCATAATGACAAGTGACAAGACCATTGATGGAAGAGGAGTTGATGTCTACATTGTTAGTGGGGCAGGTATTACCATCCAGTTCATCAAGAATGTGATCATCCATGGAATCAAAATTTTTGACATTGTGATTGGCACTGGTGGACTTATTAGAGATGCTGAGGACCACTATGGCATAAGGACTCAGAGTGATGGTGATGGAATTTCTATCTTTGGCTCCAGCAATATTTGGATTGACCATGTTTCCATGAGAAACTGCAGAGATGGATTGATAGATGCCGTTCAGGGTTCCACTGCTATTACCATCTCCAATAGCCATTTCACAAACCACAATGAGGTGATGTTGTTTGGTGCTAGTGACAGCTATGATGGTGATAAGATAATGCAGATCACATTGGCATTCAACCACTTTGGCAAGAAATTAATCCAAAGGATGCCAAGGTGCAGATATGGTTTTGTCCATGTGGTTAACAACGACTACACTCATTGGGAAATGTATGCCATTGGTGGTAGCAAGCATCCTACCATTATTAGTGAGGGTAACCGATTCATAGCCTCTAACAACAAAAATGCTAAAGAGATAACAAAGAGGGAGTACACACCAGGGTCGGAGTGGAAAAGCTGGCAATGGAGATCACTCAACGATGCGTACTTGAATGGAGCATTTTTCGTAGAAGGTGGGCCTGTGCTAACTGACAGGCCATTCTCAAGGAAGGACATGATGACAGCCAGGCCTGCCTCATATGTGCGAAGGCTCACTCGCAATGCTGGCAGCCTTAGATGCACTGTGGGTAAGCCTTGTTAG 1344 0.4308 MAKLCHFFLLICFVVIIPTLHANVKEDDAYWQRKTELLDPYWKEKAAVAEKLNQEAYSTDPYALTSNLTYSVSELIVGEQKGRRNLGGKKSGECMATNPIDRCWRCDPNWANNRKKLADCVQGFGRNTVGGKNGPFYVVTDPSDNDMVNPVPGTLRHAVTRNGPLWIIFARSMKIRLNQELIMTSDKTIDGRGVDVYIVSGAGITIQFIKNVIIHGIKIFDIVIGTGGLIRDAEDHYGIRTQSDGDGISIFGSSNIWIDHVSMRNCRDGLIDAVQGSTAITISNSHFTNHNEVMLFGASDSYDGDKIMQITLAFNHFGKKLIQRMPRCRYGFVHVVNNDYTHWEMYAIGGSKHPTIISEGNRFIASNNKNAKEITKREYTPGSEWKSWQWRSLNDAYLNGAFFVEGGPVLTDRPFSRKDMMTARPASYVRRLTRNAGSLRCTVGKPC 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1638 447 Pfam Pectate lyase 184 363 IPR002022 -
Ssu2g1638 447 Pfam Pectate lyase, N terminus 38 86 IPR007524 GO:0030570
Ssu2g1638 447 SUPERFAMILY Pectin lyase-like 98 438 IPR011050 -
Ssu2g1638 447 PANTHER PECTATE LYASE 6 447 - -
Ssu2g1638 447 Gene3D - 97 440 IPR012334 -
Ssu2g1638 447 PANTHER PECTATE LYASE 18-RELATED 6 447 IPR045032 GO:0030570
Ssu2g1638 447 SMART amb_all 172 369 IPR002022 -
Ssu2g1638 447 PRINTS Pollen allergen Amb family signature 144 169 IPR018082 -
Ssu2g1638 447 PRINTS Pollen allergen Amb family signature 324 343 IPR018082 -
Ssu2g1638 447 PRINTS Pollen allergen Amb family signature 346 365 IPR018082 -
Ssu2g1638 447 PRINTS Pollen allergen Amb family signature 418 441 IPR018082 -
Ssu2g1638 447 PRINTS Pollen allergen Amb family signature 120 137 IPR018082 -
Ssu2g1638 447 PRINTS Pollen allergen Amb family signature 388 412 IPR018082 -
Ssu2g1638 447 PRINTS Pollen allergen Amb family signature 244 265 IPR018082 -
Ssu2g1638 447 PRINTS Pollen allergen Amb family signature 180 196 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1638 Ssu-Chr2 64993013 64995627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1638 7 447 Polysaccharide Lyase AT1G14420 58.079 0.0 537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1638 K01728 - gmx:100810857 780.785