Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1634 ATGTCGCAGGTTCAGTCCATTAGCTTGAAGCATCATCTCTCACCACCAACCCACTCTTTCGTCCCTCCAAAGTTCATTATTCCTTTGAAGCGCAACTTTTCTTTCGCAACCCTCACACTCCCATCACTCTCTGTCAAATGCTACAGCCCCAACCTTGTCCAACCCAAACCCTTCCCATCACCACCACAACGCCCTCCAGTTGGAGAATTGCCGCCAAGGGTGTTCGTGGGTTACTCCGTTTACACGAGGAAGGGTGTGCTTAAGGTGTCTCCTAGACCTCCAGAATTTGAAGCAAAAAATTCCGGGGCGTTCAAAGTGTCTAGGGAAGGTTATGTGTTGCTCCAGTTTGCTCCTTCAGTTGGTACTGATGAGTCCATATATGAATATGATTGGAACCAAAAGCAGGTATTCTCACTATCTGTGAGTGAAATGGGAACTCTAATTAGCCTTGGTGCAATGGATTCTTGGGAATTTTTTCATGAGACTATTAAGGCAAAAAGCAATGAATTTGAAGTCAGAAAAGTTTTGAAGGTGGAGCCACTGCTGGATGCCACTGGTCACTTACTTAGCTTAAGCGTTCAAAAAAAGTCTGAGAACATGGAGGAAATTCAGGAAAGCATCTTTCTCCCTGTTACAAGGGCAGAACTAGCAGTTTTAAGGACGATTTTCAATTATATCATGCCATACCTTCTAGGTTGGAATGCCTTTGCAAACTCCATAAAGCCAGAGGTTTATAGTCGAGTGAATAGTTCCAACCCCAGATACGGAGCAGACGATGAATGGAACAGATAG 792 0.4444 MSQVQSISLKHHLSPPTHSFVPPKFIIPLKRNFSFATLTLPSLSVKCYSPNLVQPKPFPSPPQRPPVGELPPRVFVGYSVYTRKGVLKVSPRPPEFEAKNSGAFKVSREGYVLLQFAPSVGTDESIYEYDWNQKQVFSLSVSEMGTLISLGAMDSWEFFHETIKAKSNEFEVRKVLKVEPLLDATGHLLSLSVQKKSENMEEIQESIFLPVTRAELAVLRTIFNYIMPYLLGWNAFANSIKPEVYSRVNSSNPRYGADDEWNR 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1634 263 Pfam Whirly transcription factor 80 222 IPR013742 GO:0003697|GO:0006355|GO:0006952
Ssu2g1634 263 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 59 263 - -
Ssu2g1634 263 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 59 263 IPR013742 GO:0003697|GO:0006355|GO:0006952
Ssu2g1634 263 Gene3D Transcriptional Coactivator Pc4; Chain A 68 251 IPR009044 GO:0003677|GO:0006355
Ssu2g1634 263 SUPERFAMILY ssDNA-binding transcriptional regulator domain 72 263 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1634 Ssu-Chr2 64960527 64964034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1634 37 263 Whirly Transcription Factor Family AT1G14410 54.386 2.14e-82 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Ssu2g1634 Whirly 1.2e-47 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1634 - - gmx:100797370 400.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1634 2 64960527 64964034 Ssu2g1634 2 64960527 64964034 ECH
Ssu2g1634 2 64960527 64964034 Ssu5g1237 5 40570338 40573136 PCT