Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1633 ATGCAGGATCAAAAGCTCGAATCAGCTGAGGGGGAAATGGGAGAGGCTAGAGAAGAAAACAAGATGTTGAAGTTCTTTGACATCCTTAAACAAGATAAACCTGAAGATGCTACAAAGGCTAAAGGTATATTTAGCCATGAGGAAAGTGAAGAAAGTGAACTCGTGTCCCTTTCTCTTGGGATATCATCCACAGGTGAGGATATGGATAAACGACTTGAACTTGGGTTAGATATCAATTTGGATCCTGTAGATCAAGGTGAAGCTGAAAATAATTCCAGCAATAATGAAAGTAGCTTTGGTGAGGGAGGGAAGGAAGAGGAACCAACTGAGATGTGGCCACCCAGTAAAGTTTTGAAGACAATGAAAAGTGTGGATAAAGGTGAAGCTTCTCAACTTGATCAGCCCAAGAAGGCTAGGGTTTCTATTAGAGCCAGATGTGATGCCCAAACgATGAATGATGGGTGCCAATGGAGAAAATATGGACAGAAAATGGCAAAAGGAAATCCATGCCCGCGAGCTTACTATCGATGCACTGTTTCTACATCTTGTCCTGTAAGGAAACAGgTGCAAAGATGTGCTGAAGACATGTCCATATTGATTACCACCTATGAAGGAACCCACAATCACCCACTTCCTATGGCAGCCACTGCAATGGCCTGCACAACTTCTGCTGCCGCTTCCATGCTTCAATCTCCCTCATTGAGTTCACAACATGGACTAGTCAATTCAGCCATATCCTCCATTATCAACTCTAGTGCTCCTAATTACAACCCTAATAATGCTCTAAACTTCTCTACATACCAAGTTCCAAAACCACATCAATTCTACTTCCCCAGCTCATCTATTTCAACCTTGAATTCTCACCCCACAATCACTCTGGACCTTACAGCACCCCCAACTTCCTCAAATTCAAGCTTCACTCACATGCCAAAATACTCATCAACAGGCCTTAATTTTTCCTCAGGTTTCTCTCCTCTACAATCTAGCATGCCCCAATCACCATGGAGCAGTTATAGGGGTTACTTCAACTCTGGAACACTAACTCAAAAGAGAAACCAAGTTGGTAATTACTTGTTAAACAATAGAAATCAACCATCTCTGGGGCATCTCCATCAACCTATTTACATGAGCAACAATACCATTTCTCAACAGTCTTTGCCGGATCACATTGTTGCTGCAACCAATGCAATCACAAGCAACCCAAAATTTCAATCAGCATTAGCAACTGCTCTCACAACATATGTTGGCAATGAAGCTGGTGGTGGTAGGTTAAGAGAAAATCATGTTCTTGAGAGTGCAGAACTGAACTTAAACCTATGCAGTGAAAATAGCATAGGATGTGTATCATCAAGGTACTTGAATGTGTCTTCCTCTGCTCATAACTCTCAAAAAGGAAAGTCAAGTATATTTCCACTACCACTACCGGAGCAACGGAAGTGA 1440 0.4194 MQDQKLESAEGEMGEAREENKMLKFFDILKQDKPEDATKAKGIFSHEESEESELVSLSLGISSTGEDMDKRLELGLDINLDPVDQGEAENNSSNNESSFGEGGKEEEPTEMWPPSKVLKTMKSVDKGEASQLDQPKKARVSIRARCDAQTMNDGCQWRKYGQKMAKGNPCPRAYYRCTVSTSCPVRKQVQRCAEDMSILITTYEGTHNHPLPMAATAMACTTSAAASMLQSPSLSSQHGLVNSAISSIINSSAPNYNPNNALNFSTYQVPKPHQFYFPSSSISTLNSHPTITLDLTAPPTSSNSSFTHMPKYSSTGLNFSSGFSPLQSSMPQSPWSSYRGYFNSGTLTQKRNQVGNYLLNNRNQPSLGHLHQPIYMSNNTISQQSLPDHIVAATNAITSNPKFQSALATALTTYVGNEAGGGRLRENHVLESAELNLNLCSENSIGCVSSRYLNVSSSAHNSQKGKSSIFPLPLPEQRK 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1633 479 MobiDBLite consensus disorder prediction 458 479 - -
Ssu2g1633 479 MobiDBLite consensus disorder prediction 85 99 - -
Ssu2g1633 479 Gene3D WRKY domain 136 213 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu2g1633 479 PANTHER WRKY TRANSCRIPTION FACTOR 72B 3 462 - -
Ssu2g1633 479 SUPERFAMILY WRKY DNA-binding domain 144 212 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu2g1633 479 SMART WRKY_cls 151 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu2g1633 479 Pfam WRKY DNA -binding domain 152 210 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu2g1633 479 MobiDBLite consensus disorder prediction 82 116 - -
Ssu2g1633 479 ProSiteProfiles WRKY domain profile. 146 212 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu2g1633 479 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 3 462 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1633 Ssu-Chr2 64931430 64933682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1633 13 298 WRKY Transcription Factor Family AT5G15130 44.248 1.48e-59 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu2g1633 WRKY 4.8e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1633 - - gmx:100797911 671.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1633 2 64931430 64933682 Ssu2g1633 2 64931430 64933682 ECH
Ssu2g1633 2 64931430 64933682 Ssu1g2144 1 61101181 61106086 ECH
Ssu2g1633 2 64931430 64933682 Ssu6g1285 6 20863593 20868078 ECH
Ssu2g1633 2 64931430 64933682 Ssu3g0486 3 11597723 11600363 ECH
Ssu2g1633 2 64931430 64933682 Ssu8g2330 8 60732831 60733673 ECH
Ssu2g1633 2 64931430 64933682 Ssu6g1285 6 20863593 20868078 PCT
Ssu6g0512 6 7891543 7899061 Ssu2g1633 2 64931430 64933682 PCT