Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1629 ATGGGGAAAGGAAGAAGTCCTGGGAAATGGTTCAAGAACTTACTCTTGGGGAAGAAATCCTCGTCAAAGTCTACTTCATCAAAGaagaatgatatttttAAAACTTCAATTGACAAGGATCTGCTGGTGTCTTCTGAGGTTCCCGTGTCTGTGCCAACTGTGGATTCTTTGCTGATATCTGCACCAATATCTGGAGCTAATGATACTAAAGGAGTGCTTTCCGAAAAGGAGGTAGTTAGTAAGTCATCACATGATAGGGATGTTCTTTCAACTGGTGATGAAGAGGCTAAGGTGCAAGATGTTACTAATTTTGGATCTCAAGAGGATCTTGAGAAACTTCAGCTTACAGAAGCTGCTATAAAAGTTCAGGCTGCTTGTAGAAGCTATCTGGCTCGTCAAAACGTTCAAACACTCAAAGCTGTCATACAACTGCAAGCTTTTATTCGTGGCCACCTGGTTAGAAGACAAGCTGTTTCTGCTTTATACTGTGTGAAGGGAATAGTTAAATTTCAAGCATTGGCTCGCGGTTACAATGTTAGATGTTCTGATATTGGGCTTGCAGTCCAGAAGATTCATAAGGATACTCATTGTTCAAATTCTATTCGGGTAGTTTCATCCACACAGGCAGAGAAGCTGTCTGAAAATGTCTTTGTTTGCAAGCTTCTGGCTTCATCCCCATATGCAGTTCCTCTATCTCTCAACGGTGATCCTGGAGAACCTAACTTGGCTTGGAAGTGGCTTGACTATTGGACACAGTCACACTTTTGGGCACCTCTTCctgaattgaaaaagaaacttGACTCAGTGTCTGATGAGAAAAATGGCAGTTCTCAGACAGTTCAAAGGggacaagttaaaaaaatactcgGAAATCTCCTGCTGTGA 885 0.4 MGKGRSPGKWFKNLLLGKKSSSKSTSSKKNDIFKTSIDKDLLVSSEVPVSVPTVDSLLISAPISGANDTKGVLSEKEVVSKSSHDRDVLSTGDEEAKVQDVTNFGSQEDLEKLQLTEAAIKVQAACRSYLARQNVQTLKAVIQLQAFIRGHLVRRQAVSALYCVKGIVKFQALARGYNVRCSDIGLAVQKIHKDTHCSNSIRVVSSTQAEKLSENVFVCKLLASSPYAVPLSLNGDPGEPNLAWKWLDYWTQSHFWAPLPELKKKLDSVSDEKNGSSQTVQRGQVKKILGNLLL 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1629 294 ProSiteProfiles IQ motif profile. 139 166 IPR000048 GO:0005515
Ssu2g1629 294 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 288 - -
Ssu2g1629 294 ProSiteProfiles IQ motif profile. 115 143 IPR000048 GO:0005515
Ssu2g1629 294 SMART iq_5 137 158 IPR000048 GO:0005515
Ssu2g1629 294 SMART iq_5 114 136 IPR000048 GO:0005515
Ssu2g1629 294 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 113 180 IPR027417 -
Ssu2g1629 294 Gene3D - 111 162 - -
Ssu2g1629 294 PANTHER IQ-DOMAIN 5-RELATED 1 288 - -
Ssu2g1629 294 Pfam IQ calmodulin-binding motif 165 181 IPR000048 GO:0005515
Ssu2g1629 294 Pfam IQ calmodulin-binding motif 139 156 IPR000048 GO:0005515
Ssu2g1629 294 Pfam IQ calmodulin-binding motif 116 135 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1629 Ssu-Chr2 64875033 64877534 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1629 4 257 IQD Protein Family AT1G14380 41.339 2.61e-51 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1629 - - gmx:100800548 469.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1629 2 64875033 64877534 Ssu2g1629 2 64875033 64877534 ECH
Ssu2g1629 2 64875033 64877534 Ssu1g2141 1 60994254 60999492 ECH
Ssu2g1629 2 64875033 64877534 Ssu6g1283 6 20826792 20831879 ECH
Ssu2g1629 2 64875033 64877534 Ssu6g1283 6 20826792 20831879 PCT