Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1627 ATGGGTAACTGCCTAGATTCTTCTGCCAAAGTTGACGCTGCTCAGAGCTCCAGATCCACTTCGGGAATCTCAAAAACTACTCCTTCCAGCTTATCTATTCCATCATACAGTGAAAAAAGCAATGCCTTAAGTCTTCCCACACCAAGGTCTGAGGGTGAAATCTTGTCTTCTCCCAATCTCAAGGCCTTCACATTCAATGAGCTCAAGAATGCCACAAAAAATTTTCGCCCTGATAGTCTTCTTGGTGAAGGGGGATTTGGATATGTCTATAAGGGATGGATTGATGAACACACGTTTACAGCTTCAAAACCTGGATCAGGAATGGTTGTTGCTGTAAAGATGCTTAAGCCTGAAGGTTTTCAAGGTCATAAGGAGTGGTTGACTGAGGTTAACTACCTTGGACAACTGCACCATCCTAATCTGGTTAAATTAATTGGGTACTGCTTGGAGGGAGAGAACCGGCTATTGGTCTATGAGTTTATGCCCAAAGGGAGCTTAGAGAACCATCTGTTTAGAAGAGGACCACAACCACTCTCTTGGTCAGTGAGGATGAAGGTGGCTATTGGGGCTGCCAGAGGACTCTCCTTTCTTCATAATGCCAAATCACAAGTCATATACCGTGATTTTAAAGCTTCTAACATCCTACTGGATGCTGAGTTTAATGCTAAACTCTCTGACTTTGGTTTAGCCAAGGCGGGTCCTACTGGTGATAGAACTCATGTGTCTACTCAAGTCATGGGTACTCAAGGATATGCAGCACCTGAATATGTTGCAACTGGTCGGTTGACGGCCAAAAGTGATGTCTACAGCTTTGGGGTTGTGTTGCTTGAACTTTTATCCGGGAGACGCGCCGTCGATAAAACAATAGCCGGTATGGAGCAGAATCTGGTGGACTGGGCAAGACCATATTTGAGCGATAAGCGAAGACTGTTCCGGATTATGGACTCCAAGTTGGAGGGCCAGTACCCGCAAAAGGGTGCCTTCATGGCTGCCACACTTGCCCTGCAATGCCTGAACAGCGAGGCCAAGGCAAGGCCTCCAATGATAGAGGTTTTAACAACTCTGGAACAGATAGAAGCCCCCAAAACTGCAGGTAGAAACTCCCATTCAGAACATCATAGAGTTCACACTCCTGTGAGAAAGTCTCCTGCGCGAAACCGGTCCCCGTTAAATCTAACTCCCACTGCATCCCCTCTACCAGCTTACCGGCAATCGCCTCGTGTGCACTGA 1230 0.4683 MGNCLDSSAKVDAAQSSRSTSGISKTTPSSLSIPSYSEKSNALSLPTPRSEGEILSSPNLKAFTFNELKNATKNFRPDSLLGEGGFGYVYKGWIDEHTFTASKPGSGMVVAVKMLKPEGFQGHKEWLTEVNYLGQLHHPNLVKLIGYCLEGENRLLVYEFMPKGSLENHLFRRGPQPLSWSVRMKVAIGAARGLSFLHNAKSQVIYRDFKASNILLDAEFNAKLSDFGLAKAGPTGDRTHVSTQVMGTQGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDKTIAGMEQNLVDWARPYLSDKRRLFRIMDSKLEGQYPQKGAFMAATLALQCLNSEAKARPPMIEVLTTLEQIEAPKTAGRNSHSEHHRVHTPVRKSPARNRSPLNLTPTASPLPAYRQSPRVH 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1627 409 MobiDBLite consensus disorder prediction 1 52 - -
Ssu2g1627 409 PANTHER PROTEIN KINASE 2B, CHLOROPLASTIC 11 407 - -
Ssu2g1627 409 Gene3D Transferase(Phosphotransferase) domain 1 161 381 - -
Ssu2g1627 409 PANTHER OS01G0588500 PROTEIN-RELATED 11 407 - -
Ssu2g1627 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Ssu2g1627 409 MobiDBLite consensus disorder prediction 9 52 - -
Ssu2g1627 409 Pfam Protein tyrosine and serine/threonine kinase 79 354 IPR001245 GO:0004672|GO:0006468
Ssu2g1627 409 MobiDBLite consensus disorder prediction 362 409 - -
Ssu2g1627 409 Gene3D Phosphorylase Kinase; domain 1 51 160 - -
Ssu2g1627 409 ProSitePatterns Protein kinases ATP-binding region signature. 81 113 IPR017441 GO:0005524
Ssu2g1627 409 ProSiteProfiles Protein kinase domain profile. 75 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1627 409 CDD STKc_IRAK 81 358 - -
Ssu2g1627 409 SUPERFAMILY Protein kinase-like (PK-like) 48 355 IPR011009 -
Ssu2g1627 409 MobiDBLite consensus disorder prediction 384 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1627 Ssu-Chr2 64799516 64802913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1627 51 355 Glycoside Hydrolase AT3G07070 54.221 4.76e-113 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Ssu2g1627 PK_Tyr_Ser-Thr 1.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1627 - - gmx:100809778 788.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1627 2 64799516 64802913 Ssu2g1627 2 64799516 64802913 ECH
Ssu2g1627 2 64799516 64802913 Ssu8g2324 8 60671767 60676853 ECH
Ssu2g1627 2 64799516 64802913 Ssu6g1280 6 20780022 20785128 PCT