Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1625 ATGTTTTGTGAGTTGCAGGAGGATGATATACTCAGGGAGCAGATTAGCATCCATGGAACTGAAAATTGGGCAATTATTGCTTCTAAATTCAAGGACAAAACGACAAGACAGTGCAGAAGAAGATGGTACACTTATTTGAATTCTGATTTCAAGAAAGGAGGATGGTCGCCAGAGGAAGACATGCTTTTATGTGAGGctcaaaaaatatttggtaaCAGGTGGACAGAAATAGCAAAGGTGGTTTCAGGCAGAACGGATAATGCTGTGAAAAACCGCTTCTCCACATTGTGCAAAAAGAGGGCAAAATATGAAGCCTTAGCAAAAGAGAACACTACTTCATACattaattcaaataacaaaagGATTCTTCTCCAGCACGGGTGTGATACAGATGGAGCATCAGAATCTGCAGTAGCTATTAAGAAGATGAGGAGGTCCCATATCCCTGATGCTGCAGAAAAGATCAACTTTGGAGACAGATCACATAAACAAAACGGGATTCCAATAAATCAGCAGCCAAGAGCACCTTTTGCAGTTTTAGCTCAAAACTCTCGCAATGTCAACTTGCCAGACCAGCATCATGTCTGCAATTTGAAGTTTAGTGATTATGCCCAAAACAACAAGATTCAAGGAACATTCCTTAAAAAGGATGACCCAAAGATAAGCACATTGATGCAACAAGCAGAGTTACTAAGTTCACTAGCTCTAAAAGTTGATGCAGAGAACATGGACCAAAGCCTTGAAAATGCATGGAAGGTTCTTCAAGAGTTTCTGAACCGAACCAAAGAATCAGACATTCCCAGATATAAGATTCCAGATTTACAACTTGTAGATCTTAAAGATTTATTGGAGGACTTAAAGAGCAGTAGCGAGGAAATCCAGCCATGCTGGAGGCAAATGGAACTATATGAAGACTCTCCAGGCAGTTCTGATTACAGTACAGGATCAACTCTCCTCCCTCATTCAGCTGGTGAGAATTTGGAACACTCACTGCATCAGGATGTTGGAACTGAACTTAATATACAAATTGTAGATCCAAAAGGAGTTAGGGGATGTGACCAACGGGTTCTTTCTAGTGCAACTCTGGATCAAGATTTATTCCCATCTTGTGAGGAACAGATAAACAATGATGGCATTGTTTCTGCCTTGTCATGTTTGGAGGAGTTCAGCTCACCTCTTCAAGTTACCCCTCTGTTTAGATCCTTAGCTGCTGGAATTCCTAGCCCACAATTTTCAGAAAGTGTAAGTTAG 1251 0.4005 MFCELQEDDILREQISIHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENTTSYINSNNKRILLQHGCDTDGASESAVAIKKMRRSHIPDAAEKINFGDRSHKQNGIPINQQPRAPFAVLAQNSRNVNLPDQHHVCNLKFSDYAQNNKIQGTFLKKDDPKISTLMQQAELLSSLALKVDAENMDQSLENAWKVLQEFLNRTKESDIPRYKIPDLQLVDLKDLLEDLKSSSEEIQPCWRQMELYEDSPGSSDYSTGSTLLPHSAGENLEHSLHQDVGTELNIQIVDPKGVRGCDQRVLSSATLDQDLFPSCEEQINNDGIVSALSCLEEFSSPLQVTPLFRSLAAGIPSPQFSESVS 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1625 416 SUPERFAMILY Homeodomain-like 25 104 IPR009057 -
Ssu2g1625 416 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 46 IPR017930 -
Ssu2g1625 416 ProSiteProfiles Myb-like domain profile. 47 97 IPR001005 -
Ssu2g1625 416 Pfam Myb-like DNA-binding domain 52 95 IPR001005 -
Ssu2g1625 416 Pfam Myb-like DNA-binding domain 6 46 IPR001005 -
Ssu2g1625 416 PANTHER TRANSCRIPTION FACTOR MYB88 6 414 - -
Ssu2g1625 416 PANTHER MYB PROTEIN-RELATED 6 414 - -
Ssu2g1625 416 Gene3D - 4 51 - -
Ssu2g1625 416 Gene3D - 54 123 - -
Ssu2g1625 416 CDD SANT 6 46 IPR001005 -
Ssu2g1625 416 CDD SANT 55 96 IPR001005 -
Ssu2g1625 416 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 47 101 IPR017930 -
Ssu2g1625 416 ProSiteProfiles Myb-like domain profile. 6 46 IPR001005 -
Ssu2g1625 416 SMART sant 51 99 IPR001005 -
Ssu2g1625 416 SMART sant 6 48 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1625 Ssu-Chr2 64741139 64745071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1625 6 298 MYB Transcription Factor Family AT2G02820 64.094 8.12e-131 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu2g1625 Myb_DNA-binding 1.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1625 K09422 - gmx:100807667 745.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1625 2 64741139 64745071 Ssu2g1625 2 64741139 64745071 ECH
Ssu5g1246 5 41034047 41038908 Ssu2g1625 2 64741139 64745071 PCT