Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1623 ATGGCTTTCTTCCCAGCAAATTTCATGCTCCAAACCCCTCACCATGATGATCATCAACCTCCACCTTCGCTCACCTCAATTCTACCCACGTGTACACCTCAAGAATATCATGGGGGAGTGTCCTTTCTAGGAAAGAGATCCATGTCATTTTCATCAGGAATTGAGCATGGAGAAGAGGTCAATGCTGAGGAAGACTTGTCTGATGATGGGTCACAGGCAggggagaagaagaggaggcTTAACATGGAACAAGTGAAGACACTTGAGAAGAGCTTTGAGTTGGGGAATAAGCTTGAGCCAGAGAGGAAAATGCAGCTTGCAAGAGCTCTTGGCTTGCAGCCAAGACAAATTGCTATATGGTTCCAGAACAGAAGGGCTAGGTGGAAGACCAAGCAGTTGGAGAAAGACTATGATCTCCTCAAAAGACAGTATGAAGCTGTCAAGTCAGATAATGATGCACTTCAAGCTCAGAACCAAAAACTCCAGGCTGAGATATTGGCACTGAAAAGTAGAGAGCCAACTGAATCCATCAACCTTAACAAAGAAACAGAAGGATCCTGCAGCAATAGAAGTGAGAACAGCTCAGACATCAAGTTGGATATCTCAAGGACACCAGCTATTGACAGTCCTCTATCCACACATCAGCCAAGCAGACCTCTCTTTCCATCTTCTGCTAGGCCTGCAGGAGTTGCTCAGCTTTTCCAAACTTCTTCAAGACCAGACCTTCCATGCCAAAAGATTGACCAAATAGTCAAAGAAGAAAGCTTAAGCAACATGTTCTGTGGCATGGATGATCAATCCGGGTTTTGGCCATGGTTGGAGCAGCAGCATTTCAATTGA 840 0.4393 MAFFPANFMLQTPHHDDHQPPPSLTSILPTCTPQEYHGGVSFLGKRSMSFSSGIEHGEEVNAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKSDNDALQAQNQKLQAEILALKSREPTESINLNKETEGSCSNRSENSSDIKLDISRTPAIDSPLSTHQPSRPLFPSSARPAGVAQLFQTSSRPDLPCQKIDQIVKEESLSNMFCGMDDQSGFWPWLEQQHFN 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1623 279 MobiDBLite consensus disorder prediction 179 199 - -
Ssu2g1623 279 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 1 279 - -
Ssu2g1623 279 CDD homeodomain 76 132 IPR001356 GO:0003677
Ssu2g1623 279 Pfam Homeodomain 76 129 IPR001356 GO:0003677
Ssu2g1623 279 Coils Coil 123 171 - -
Ssu2g1623 279 MobiDBLite consensus disorder prediction 58 80 - -
Ssu2g1623 279 ProSitePatterns 'Homeobox' domain signature. 106 129 IPR017970 GO:0000981|GO:0006355
Ssu2g1623 279 Gene3D - 68 137 - -
Ssu2g1623 279 SMART HOX_1 74 135 IPR001356 GO:0003677
Ssu2g1623 279 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 279 IPR045224 GO:0003700
Ssu2g1623 279 SUPERFAMILY Homeodomain-like 66 133 IPR009057 -
Ssu2g1623 279 ProSiteProfiles 'Homeobox' domain profile. 71 131 IPR001356 GO:0003677
Ssu2g1623 279 PRINTS Lambda-repressor HTH signature 111 127 IPR000047 GO:0003677
Ssu2g1623 279 PRINTS Lambda-repressor HTH signature 102 111 IPR000047 GO:0003677
Ssu2g1623 279 Pfam Homeobox associated leucine zipper 131 171 IPR003106 GO:0006355|GO:0043565
Ssu2g1623 279 MobiDBLite consensus disorder prediction 176 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1623 Ssu-Chr2 64692825 64694378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1623 1 279 Homeobox Transcription Factor Family AT1G69780 64.407 1.69e-122 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu2g1623 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1623 K09338 - gmx:100814080 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1623 2 64692825 64694378 Ssu2g1623 2 64692825 64694378 ECH
Ssu2g1623 2 64692825 64694378 Ssu5g1224 5 40094463 40096195 PCT