Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1621 ATGTCTAGCAGAAGATCTCGCTCGAGACAAGCCGGTGCTTCCGCTGAGATCACAGATGCTCAAATCACCGATCTCGTTTCAAAGTTACAACAACTTATCCCTGAGCTCCGCGCAAGGCGCTCCGACAAGGTTTCAGCTGCTAAGGTATTGCAGGAGACTTGCAACTACATAAAAAACTTGCACAGAGAGGTTGATGATTTAAGTGACCGATTGTCAGAGCTTTTGGCTAACACAGACTCCAACAGTGCTCAAGCAGCCATTATTAGGAGCTTACTTATGTAA 282 0.461 MSSRRSRSRQAGASAEITDAQITDLVSKLQQLIPELRARRSDKVSAAKVLQETCNYIKNLHREVDDLSDRLSELLANTDSNSAQAAIIRSLLM 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1621 93 Coils Coil 57 77 - -
Ssu2g1621 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Ssu2g1621 93 PANTHER TRANSCRIPTION FACTOR PRE6 1 93 - -
Ssu2g1621 93 Gene3D - 20 89 IPR036638 GO:0046983
Ssu2g1621 93 PANTHER TRANSCRIPTION FACTOR PRE 1 93 IPR044293 GO:0006355|GO:0040008|GO:0046983
Ssu2g1621 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 82 IPR036638 GO:0046983
Ssu2g1621 93 CDD bHLH_AtPRE_like 17 77 - -
Ssu2g1621 93 Pfam Helix-loop-helix DNA-binding domain 21 60 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1621 Ssu-Chr2 64645582 64646557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1621 1 93 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 70.213 1.65e-36 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu2g1621 HLH 8.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1621 - - gmx:100804830 166.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1621 2 64645582 64646557 Ssu2g1621 2 64645582 64646557 ECH
Ssu2g1621 2 64645582 64646557 Ssu1g2134 1 60841252 60842318 ECH
Ssu2g1621 2 64645582 64646557 Ssu3g0474 3 11087605 11088936 ECH
Ssu2g1621 2 64645582 64646557 Ssu8g2320 8 60496496 60498219 ECH