Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1620 ATGTGGATCCGAGGATTCAGTTTTTGGATCAAGGGTTGCACGTTGTTGGCCTTAATATCTGTAATTTCCGCTCTGAAACCCGAACTGGGATCGACCCGCGTCGTCTTTCAGACAAATTATGGGGATATTGAATTTGGTTTCTTTCCAACTGTTGCACCCAAAACTGTTGACCACATTTTTAAGCTTGTGCGACTTGGAGGCTATAACACTAATCATTTCTTTCGGGTGGATAAGGGATTTGTGGCCCAAGTAGCAGATGTTATGGGTGGAAGATCTGCTCCCATGAATGAGGAACAAAAAAGAGAAGCTAAAAAGACTGTTGTTGGTGAATTTAGTGAAGTCAAACATGTTCGGGGTATTCTTTCCATGGGAAGGTATGATGATCCAGATAGTGCTTCATCCTCATTTTCAATACTTCTTGGAGATGCTCCTCATCTTGATGGCAAGTATGCAATATTTGGAAGAGTTACTAAAGGTGATGAAACATTAACAAAGCTCGAGCAACTACCTACCCGTAAAGAGGGTATATTTGTAATGGTATACTAG 546 0.4121 MWIRGFSFWIKGCTLLALISVISALKPELGSTRVVFQTNYGDIEFGFFPTVAPKTVDHIFKLVRLGGYNTNHFFRVDKGFVAQVADVMGGRSAPMNEEQKREAKKTVVGEFSEVKHVRGILSMGRYDDPDSASSSFSILLGDAPHLDGKYAIFGRVTKGDETLTKLEQLPTRKEGIFVMVY 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1620 181 CDD cyclophilin 35 175 - -
Ssu2g1620 181 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 73 85 IPR002130 GO:0000413|GO:0003755
Ssu2g1620 181 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 47 62 IPR002130 GO:0000413|GO:0003755
Ssu2g1620 181 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 148 163 IPR002130 GO:0000413|GO:0003755
Ssu2g1620 181 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 134 IPR002130 GO:0000413|GO:0003755
Ssu2g1620 181 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 35 181 IPR002130 GO:0000413|GO:0003755
Ssu2g1620 181 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 34 173 IPR002130 GO:0000413|GO:0003755
Ssu2g1620 181 SUPERFAMILY Cyclophilin-like 22 177 IPR029000 -
Ssu2g1620 181 Gene3D - 22 179 IPR029000 -
Ssu2g1620 181 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP23 15 180 - -
Ssu2g1620 181 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP23 15 180 IPR044233 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1620 34 170 U-box Gene Family AT5G67530 30.345 1.11e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1620 - - gmx:100819238 338.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1620 2 64586373 64589674 Ssu2g1620 2 64586373 64589674 ECH