Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1613 ATGACGTCACAGAACAACCTTGTTCCACCACCACACGGGACAACAGCGTTGTCACTGCTACTACTACTTACCGCCAATAACAACCTCCACTTGACGGACCAGTCGAAGAAGCCTCCGCCAAAGCGGAGTTCCACGAAGGACCGCCACACGAAGGTAGATGGGCGCGGCCGCCGGATCCGCATGCCGGCAGCCTGTGCAGCCAGAGTGTTCCAGCTCACGCGTGAGCTGGGACACAAGTCTGACGGCGAGACCATCGAGTGGCTCCTCCAGCAGGCGGAGCCAGCGGTCATCGCGGCCACCGGCACCGGCACCATTCCCGCCAACTTCACCTCCCTCAACATCTCCCTCCGCAGCTCCGGGTCCACCATGTCGGCGCCGTCGCACTACTTCCGCGGAAACTATTTCAACCCTAGCACGTTCTCCACCTCAACCGCCGCCGCAGCGGCGGCGGCGGCGCAGCTAAGAAACCGCGCGGAGTGGGACCGGACCATGAGCATGGTGATGGAGGATTCCCGTAGGAGCATGTTGGAGAACACTTCTTCCATCTCCGCGATTTTGAATTTCAACCCTATCGGCAACGTGAATGTAATTCAACAAGCGAAGCAAGAGCTCCGAGAAGAAtccggcggcggcggcggtCTTGAATCGGTGGCCTCGGATTCCGATGGAAGCTTAGGGAGAAAGAGAAGGCCGCCGGAGCAAGAACTATCACAAATGGGAAGCTATTTGATACAATCGAGCACAGGGTCGCTTCCGGCGAGCCACGCTTCCAATACGGCAGCGTTTTGGATGGTGGCGGGTCACGGAAACCAAGGCAtgagtggtggtggtggtggaggcggcGGCGGCAATGGTAGCGATAATCCCATTTGGGCAATTCCCTCTGTTGGGAATAGTGGTGTGTATAGAGGGGCCATGTCTGCCCCAGGTGGCATtcatttcatgaattttgcttCTCCGATGCCTCTTATGCCCGGCGGTCAACTAGGTTCCGGCATGGTTGGTGGCggcggtggcggtggcggtCAACTTCTAAGTGAAAGTAACTTAGGCATGCTTGCGGCCCTTAATGCTTATAGGCAAATTCCGGCAAACGGCGTCTCGGAGTCTCCGGCCAGCGCCGGGCAACCTCACGGCGGAGATGATGGACGTGACTCAACCAGTCGACATTCCTGA 1176 0.5391 MTSQNNLVPPPHGTTALSLLLLLTANNNLHLTDQSKKPPPKRSSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTMSAPSHYFRGNYFNPSTFSTSTAAAAAAAAQLRNRAEWDRTMSMVMEDSRRSMLENTSSISAILNFNPIGNVNVIQQAKQELREESGGGGGLESVASDSDGSLGRKRRPPEQELSQMGSYLIQSSTGSLPASHASNTAAFWMVAGHGNQGMSGGGGGGGGGNGSDNPIWAIPSVGNSGVYRGAMSAPGGIHFMNFASPMPLMPGGQLGSGMVGGGGGGGGQLLSESNLGMLAALNAYRQIPANGVSESPASAGQPHGGDDGRDSTSRHS 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1613 391 MobiDBLite consensus disorder prediction 202 236 - -
Ssu2g1613 391 MobiDBLite consensus disorder prediction 30 57 - -
Ssu2g1613 391 MobiDBLite consensus disorder prediction 365 391 - -
Ssu2g1613 391 ProSiteProfiles TCP domain profile. 45 99 IPR017887 -
Ssu2g1613 391 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 24 391 IPR005333 GO:0003700
Ssu2g1613 391 Pfam TCP family transcription factor 44 157 IPR017887 -
Ssu2g1613 391 PANTHER TCP FAMILY TRANSCRIPTION FACTOR 24 391 - -
Ssu2g1613 391 MobiDBLite consensus disorder prediction 35 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1613 Ssu-Chr2 64416622 64417797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1613 35 328 TCP Transcription Factor Family AT3G47620 42.687 1.58e-52 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Ssu2g1613 TCP 1.9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1613 - - gmx:100781296 580.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1613 2 64416622 64417797 Ssu2g1613 2 64416622 64417797 ECH
Ssu2g1613 2 64416622 64417797 Ssu6g1271 6 20672766 20673959 PCT