Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1611 atgaacgTGGATCTGGAATCATTGGCAGAGGCCACTTCTGGAGCCATAGGATCATTGCTCAGCACCACTCTTCTGTACCCGCTTGACACGTGCAAGACCAAGTACCAGGCCGAGGCTCGTTCCCATGGTCACAGAAAATACAGGAATCTCACTGATGTATTGTTGGAGGCAATATCTACCCGTCAGGTGGTTTCACTTTACCAGGGCCTTGGAACAAAGAATCTGCAAGCCTTCTTTTCGCAATTTGTCTACTTTTATGGATACAGCTATTTTAAAAGACTGTATCTAGAAAAAAGTGGTTATAAATCCATTGGAACAAAAGCAAACTTGGTTATTGCTGCTGCTGCTGGGGCCTGCACTGCCATTGTGACTCAGCCCCTGGATACAGCCTCTTCAAGGATGCAGACAAGTGACTTTGGAAAGTCTAAAGGGCTGCTGAAAACCCTTACGGAAGGAACCTGGAGTGATGCATTTGACGGCCTCGGTATTTCCTTGCTGCTGACCTCAAACCCTGCAATTCAGTATACAGTGTTTGATCAGCTGAAACATCGAGCCCTGATGAATAAGCAAAACAACGCTGATAAAGGAACATCTCCAGCATCCCTTTCTGCATTTATGGCCTTTCTTTTAGGTGCAATTTCAAAGAGCATTGCTACCTGTCTAACATATCCAGCTATTAGGTGCAAAGTTATCATTCAAGCTGCAGCATCAGATGAAGCAACCTCCAAAACAAAGAGATCGCAGAAAACAGTGTCTAGAGTTCTCTATGGCATATGGAAAAGGGAGGGCATACTGGGATTTTTTAAAGGATTGCATGCTCAGATCTTAAAAACTGTTTTGAGCTCAGCACTGCTCTTAATGATCAAGGAAAAGATCTCTGCTACTACTTGGGTGCTTATCCTTGCAGTTAAAAGGTACCTATTACTCACAAGGGGTAGGGTTAAGAACTTGTAA 954 0.4361 MNVDLESLAEATSGAIGSLLSTTLLYPLDTCKTKYQAEARSHGHRKYRNLTDVLLEAISTRQVVSLYQGLGTKNLQAFFSQFVYFYGYSYFKRLYLEKSGYKSIGTKANLVIAAAAGACTAIVTQPLDTASSRMQTSDFGKSKGLLKTLTEGTWSDAFDGLGISLLLTSNPAIQYTVFDQLKHRALMNKQNNADKGTSPASLSAFMAFLLGAISKSIATCLTYPAIRCKVIIQAAASDEATSKTKRSQKTVSRVLYGIWKREGILGFFKGLHAQILKTVLSSALLLMIKEKISATTWVLILAVKRYLLLTRGRVKNL 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1611 317 PRINTS Mitochondrial carrier protein signature 113 135 IPR002067 GO:0055085
Ssu2g1611 317 PRINTS Mitochondrial carrier protein signature 20 38 IPR002067 GO:0055085
Ssu2g1611 317 PRINTS Mitochondrial carrier protein signature 67 85 IPR002067 GO:0055085
Ssu2g1611 317 PANTHER PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 1 1 316 - -
Ssu2g1611 317 Pfam Mitochondrial carrier protein 202 293 IPR018108 -
Ssu2g1611 317 Pfam Mitochondrial carrier protein 6 98 IPR018108 -
Ssu2g1611 317 Pfam Mitochondrial carrier protein 104 184 IPR018108 -
Ssu2g1611 317 ProSiteProfiles Solute carrier (Solcar) repeat profile. 5 94 IPR018108 -
Ssu2g1611 317 ProSiteProfiles Solute carrier (Solcar) repeat profile. 202 295 IPR018108 -
Ssu2g1611 317 Gene3D Mitochondrial carrier domain 5 296 IPR023395 -
Ssu2g1611 317 PANTHER PEROXISOMAL ADENINE NUCLEOTIDE TRANSPORTER 1 1 316 IPR045900 GO:0005347|GO:0006635|GO:0015217
Ssu2g1611 317 SUPERFAMILY Mitochondrial carrier 7 291 IPR023395 -
Ssu2g1611 317 ProSiteProfiles Solute carrier (Solcar) repeat profile. 104 184 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1611 Ssu-Chr2 64360010 64362593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1611 23 284 Chloroplast and Mitochondria Gene Families AT1G25380 29.710 2.94e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1611 - - gmx:100787682 560.836