Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1603 ATGGAAGAGAGAAATGATACTGAGAAACTTGATGAAGTTATGCTACCAGGGTTCAGGTTTCATCCAACTGATGAGGAGCTTGTTGGGTTTTATCTCAAGAGAAAGATTCAGCAACGCCCTTTGATTATTGAGCTCATCAAGCAGCTTGATATCTACAAACATGACCCTTGGGATCTTCCAAAGTTGGCCACCACAGGAGAGAAAGAGTGGTATTTCTACTGTCCCAGAGACAGAAAATACAGAAACAGTGCAAGGCCTAATAGGGTAACTGGAGCTGGGTTCTGGAAAGCTACTGGGACTGATAGGCCTATCTACTCCTCAGAAGGTTCCAGGTGTATTGGCCTGAAGAAATCCCTAGTCTTTTACAAAGGTCGAGCTGCCAAAGGAGTCAAAACTGACTGGATGATGCATGAGTTCAGGCTACCTTCTCTCACAGACTCACTATCCTCAAAGTACATAGACAGGACCATTCCTGCTAATGAATCTTGGGCTATCTGCAGGATATTCAAGAAAACCAATTCTACAGCTCAAAGAGCTTTATCTCACTCTTGGGTCTCTTTCCCACCTGAAACAAGAACCTCTGATATCCTAACCAAAGATCAAGACAGCATCCAGTTTTGTTCAGACAACATGCCATTGACAAAGAAAACTAGCTCAGCCAGCCAGTTCTGTACTAACAATTACAATGATGCACAGCCTTTAACCACTAATAGTAGTACTACTCTTTGTCCTTTAGATGTTGCCTCATATAAATCCATTATTAACCCATTGCTTTACAAAGCCTTTGATCATTTACCCATTTCAAATGGAGACCTTAGCACTAGCTTGCTATTCTCATCTCCTTTTGAAACATCAGATACTAATGCCAAATCTACAATGGACGTTTCTTCCATGTTGTTGAACATGTCTTCATCAGTGTTTGGAGATTTTAGTAAGACTTCAGAAGATGCAAATACAAATGCAACTACAAACTTTGGTGGGTTGCAAGAGCACTGTAGTGGCTACCCAATACCATTTCTACGTGAGATGCAAACCACTTTTGGTAACCAACAATATGATAATACTAATGCATTGGTAAAGGTTCCTAATGTGAATGTGCCTCGTGTTGATGACCAAGAGTTGGAGTTGGAGACAGTACGACCCATTGGGTTTCCATTCAGTAGCATGCCTTTCAACATTGGCGATGCATGGAAGTCAAATCTGCTTTGGGATACTTCCTCTTTTCCTTGTGATGTGCCATCTAGTTATTCCAAAACCAAGTGCTATAGTTAg 1272 0.4127 MEERNDTEKLDEVMLPGFRFHPTDEELVGFYLKRKIQQRPLIIELIKQLDIYKHDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSRCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLTDSLSSKYIDRTIPANESWAICRIFKKTNSTAQRALSHSWVSFPPETRTSDILTKDQDSIQFCSDNMPLTKKTSSASQFCTNNYNDAQPLTTNSSTTLCPLDVASYKSIINPLLYKAFDHLPISNGDLSTSLLFSSPFETSDTNAKSTMDVSSMLLNMSSSVFGDFSKTSEDANTNATTNFGGLQEHCSGYPIPFLREMQTTFGNQQYDNTNALVKVPNVNVPRVDDQELELETVRPIGFPFSSMPFNIGDAWKSNLLWDTSSFPCDVPSSYSKTKCYS 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1603 423 ProSiteProfiles NAC domain profile. 14 171 IPR003441 GO:0003677|GO:0006355
Ssu2g1603 423 Pfam No apical meristem (NAM) protein 16 141 IPR003441 GO:0003677|GO:0006355
Ssu2g1603 423 SUPERFAMILY NAC domain 13 171 IPR036093 GO:0003677|GO:0006355
Ssu2g1603 423 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 421 - -
Ssu2g1603 423 Gene3D NAC domain 23 176 IPR036093 GO:0003677|GO:0006355
Ssu2g1603 423 PANTHER PROTEIN FEZ ISOFORM X1 1 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1603 Ssu-Chr2 64197532 64199090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1603 1 311 NAC Transcription Factor Family AT1G26870 56.495 4.58e-110 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu2g1603 NAM 1.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1603 - - gmx:100783995 711.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1603 2 64197532 64199090 Ssu2g1603 2 64197532 64199090 ECH