Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1601 ATGAAAACAAAACCCTGCAATCCCCCTTTTATAGGTCTCTGCGGCGGATCTTGTGGTTCCTCCGAAAACCCTAACAACAGAGGCGCAGGCGCAGAGCGTGATCGAAGATGGTGCAGCGTCTCACCTATCGCAAGCGGCACAGCTATGCCACCAAAGTCCAACCAGCACAGGGTCGTCAAGACCCCTGGGGGGAAGCTCGTTTATCAGAGCACCAAGAAGAGGGCTAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGATTCCACACTTGAGGCCTGCAGAATATAAGAGGTCAAGGCTACCTAGAAACCGTAGGACTGTGAACCGTGCATATGGAGGAGTTTTGTCTGGAAGTGCTGTCAGGGAAAGGATTATTCGAGCTTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTTGAAGATCCAGAAGGCGAAGGAAAAGCAGGCATTGAAGGGTTGA 471 0.5159 MKTKPCNPPFIGLCGGSCGSSENPNNRGAGAERDRRWCSVSPIASGTAMPPKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQALKG 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1601 156 Gene3D - 51 74 - -
Ssu2g1601 156 PANTHER - 51 155 - -
Ssu2g1601 156 Pfam Ribosomal protein L34e 52 132 IPR008195 GO:0003735|GO:0005840|GO:0006412
Ssu2g1601 156 PRINTS Ribosomal protein L34 signature 80 90 IPR008195 GO:0003735|GO:0005840|GO:0006412
Ssu2g1601 156 PRINTS Ribosomal protein L34 signature 49 62 IPR008195 GO:0003735|GO:0005840|GO:0006412
Ssu2g1601 156 PRINTS Ribosomal protein L34 signature 62 79 IPR008195 GO:0003735|GO:0005840|GO:0006412
Ssu2g1601 156 PRINTS Ribosomal protein L34 signature 102 124 IPR008195 GO:0003735|GO:0005840|GO:0006412
Ssu2g1601 156 PANTHER 60S RIBOSOMAL PROTEIN L34 51 155 IPR008195 GO:0003735|GO:0005840|GO:0006412
Ssu2g1601 156 Gene3D - 75 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1601 Ssu-Chr2 63990075 63991671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1601 52 153 Cytoplasmic Ribosomal Protein Gene Family AT1G69620 93.137 2.22e-64 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1601 K02915 - sind:105177244 184.496
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1601 2 63990075 63991671 Ssu2g1601 2 63990075 63991671 ECH