Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1598 ATGGACCTAACCAACGACACCAACACCTTAGACACAAATTCTCAAACCCCCCAACCCACCTCCACCAACGGGTCCCTCAaacgccaccaccaccaccaccaccaccaccaccacaccaCCGTACCACCGCCGTCACAGCCACCGTCCACGGTGGCTTCATACAAGGAGTGCCTCAAAAATCATGCAGCCAGCATAGGTGGCCACGCGCTTGATGGATGCGGTGAATTCATGccctcttcttcttccaacCCCACAGAACCACGCTCGCTAACGTGCGCCGTGTGTGGCTGTCACCGTAACTTCCACCGCCGCGACACACAGGAATTCTCAAACCCCAATTTCATCAGCTTCTACCACTcgccaccgccaccgccaccgccaccactacccCACCGCAGGTCGGGCCTGTGCATTAGCCCGAGCCCGAGCCCAAGCCCGATGTCAAGCCCGAGCCCATCACCACTCTCTCACCATTTCCAAGGCCCGAGAGCATTCTTGGGCCTTGGAAATGAGTATCACatgggttttaattttaactcttCCAAGACAGAGAACTCAAGTGGGAAGAAGAGGTATAGGACCAAGTTCAGCCAAGAGCagaaggagaagatgcagaGCTTCTCTGAGAAATTGGGTTGGAGAATGCAGAAAGCGGATGAGGGAATGGTGCAAGAGTTCTGCAGTGAGATTGGCGTGTCCAGAGGGGTCTTCAAGGTTTGGATGCACAACAATAAGAACAATTTCGGGAAGAGATCGCTGGAGCCTGGTGAGAAGATCAATGCCAGTGGTAGTGATAGTACTAATAATAATCCTTACAACACAAATGACACCAACGAGGACATTCACTGA 849 0.4476 MDLTNDTNTLDTNSQTPQPTSTNGSLKRHHHHHHHHHHTTVPPPSQPPSTVASYKECLKNHAASIGGHALDGCGEFMPSSSSNPTEPRSLTCAVCGCHRNFHRRDTQEFSNPNFISFYHSPPPPPPPPLPHRRSGLCISPSPSPSPMSSPSPSPLSHHFQGPRAFLGLGNEYHMGFNFNSSKTENSSGKKRYRTKFSQEQKEKMQSFSEKLGWRMQKADEGMVQEFCSEIGVSRGVFKVWMHNNKNNFGKRSLEPGEKINASGSDSTNNNPYNTNDTNEDIH 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1598 282 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 54 105 IPR006456 -
Ssu2g1598 282 MobiDBLite consensus disorder prediction 1 52 - -
Ssu2g1598 282 MobiDBLite consensus disorder prediction 25 40 - -
Ssu2g1598 282 Gene3D - 176 249 - -
Ssu2g1598 282 MobiDBLite consensus disorder prediction 1 24 - -
Ssu2g1598 282 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 54 105 IPR006456 -
Ssu2g1598 282 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 9 36 252 - -
Ssu2g1598 282 SUPERFAMILY Homeodomain-like 180 250 IPR009057 -
Ssu2g1598 282 MobiDBLite consensus disorder prediction 112 159 - -
Ssu2g1598 282 MobiDBLite consensus disorder prediction 186 201 - -
Ssu2g1598 282 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 36 252 - -
Ssu2g1598 282 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 189 246 IPR006455 -
Ssu2g1598 282 MobiDBLite consensus disorder prediction 179 201 - -
Ssu2g1598 282 MobiDBLite consensus disorder prediction 259 282 - -
Ssu2g1598 282 Pfam ZF-HD protein dimerisation region 53 106 IPR006456 -
Ssu2g1598 282 MobiDBLite consensus disorder prediction 117 133 - -
Ssu2g1598 282 MobiDBLite consensus disorder prediction 247 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1598 Ssu-Chr2 63929881 63930729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1598 1 245 ZF-HD Transcription Factor Family AT5G15210 44.015 4.29e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Ssu2g1598 ZF-HD_dimer 4.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1598 - - gmx:100817446 357.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1598 2 63929881 63930729 Ssu2g1598 2 63929881 63930729 ECH