Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1588 ATGGCTTCAGAAACAGAGGTGCCGGATATTTCCTCTGTTCTCGAGAGGTTCGAGCGAAACAGAGACATGGCTCTGTTCCTGCCCTTCCTCTTCGGCTTCTCGGACTCGTCCCCGGGACGAGACGGCGACGACCCAGATCACGAAACTGCGAACGCCGAAGGTTCCCCGCGTCAAAGAATCATCTTGGTGAACCCCTTCACTCAGGGCATGGTGGTCATCGACGGTGCCTCGAGCCTCGAAGCTCTGTTTCGCGAACTCGGGACCGTAAAAAGCGGTCGACCACCGGCTTCGAAGGAGTCCATAGATGCCATGCCAAGTGTGGAAATTGGAGAAGGGTGTGAGGATTTGGAGTGTGTGGTTTGTTTGGAGGAGTTTGGGGTGGGTGGGGTGGCAAAGGAGATGCCATGCAAGCATAGGTTTCACCATAATTGTATTGAGAAGTGGTTGGGGATTCATGGGTCCTGCCCTGTGTGTAGGTATGAGATGCCTGAGGAGGAGAGGGCTGAGGGGAAGAAGAGGGAGGAGGAAGGGGGAGAGAGGAGAAggggcggtggtggtggtgaggtTTGGGTTAGTTTTTCTTTCAATAGGAGTAGGAGAGGCCAGGGTCATGATCAAGCTGATTCTAGTGAGTCAAATGATGGTTCTCCATCAAGTCATGATGGGGGTGATGCTGAGACACAGAGTtag 690 0.5145 MASETEVPDISSVLERFERNRDMALFLPFLFGFSDSSPGRDGDDPDHETANAEGSPRQRIILVNPFTQGMVVIDGASSLEALFRELGTVKSGRPPASKESIDAMPSVEIGEGCEDLECVVCLEEFGVGGVAKEMPCKHRFHHNCIEKWLGIHGSCPVCRYEMPEEERAEGKKREEEGGERRRGGGGGEVWVSFSFNRSRRGQGHDQADSSESNDGSPSSHDGGDAETQS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1588 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 165 IPR013083 -
Ssu2g1588 229 MobiDBLite consensus disorder prediction 39 53 - -
Ssu2g1588 229 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 10 209 - -
Ssu2g1588 229 MobiDBLite consensus disorder prediction 37 56 - -
Ssu2g1588 229 SMART ring_2 118 158 IPR001841 -
Ssu2g1588 229 MobiDBLite consensus disorder prediction 165 183 - -
Ssu2g1588 229 Pfam Ring finger domain 117 159 IPR001841 -
Ssu2g1588 229 MobiDBLite consensus disorder prediction 208 229 - -
Ssu2g1588 229 ProSiteProfiles Zinc finger RING-type profile. 118 159 IPR001841 -
Ssu2g1588 229 SUPERFAMILY RING/U-box 113 164 - -
Ssu2g1588 229 MobiDBLite consensus disorder prediction 165 229 - -
Ssu2g1588 229 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 10 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1588 Ssu-Chr2 63724200 63724889 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1588 1 213 C3H Transcription Factor Family AT1G26800 54.378 1.76e-67 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1588 - - ccaj:109816232 293.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1588 2 63724200 63724889 Ssu2g1588 2 63724200 63724889 ECH