Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1586 ATGGATCTACAAAACATGCAAAATCAAAGCATGCATTTTGTGCTGTCCACTGATGCCAAACCAAGGCTAAAATGGACTCCTGAGCTTCACCAAAGATTCATTGAGGCAACCACTCAGCTTGGAGGTGCAGATAAAGCAACTCCAAAGAGTCTTATGAGGGTGATGGGGATTCCAGGACTTACTTTGTACCACCTCAAGAGCCATTTACAGAAATATAGACTTGGGAAAAGCCAACAACTGGAAACCTGCTCTAACAACAAACAAGAAGATTACATAGAAACCAAGAGCAGTGATGGCCATTGCAGCAGGGAAATCAGTCTTGGGGCCCAGAATCAAATTACTGaAAACATGCAGATTGCTCAGGCTCTCCAAATGCAAATGGAAGCACAAAGGAAACTTTATGAACAAATTGAGGTGCAGAAACATTTGCAGCTCAGAATTGAAGCTCAAGGGAAGTATTTACAATCAGTGCTAAAGAAGGCACAGGAAGCACTTGCTGGATACAATTCTTCCCCAGTGGGTATTGAACTCACAAAAGCTGAACTTTCTCAGCTAGTTACCATCATCAACAATGCTTGTCCAAGTTCTCCCATCTCAGAACTGACAGAAACAAGAGGGGTGAGTCTAAACTGTGGGGAGAGGAAAAGAGACACAGGTACTATGTGTTCACTGGAAAGTTCTTTGACATCTTCTGAAAGCTCAGGGGGAAAGGAAGAGAAACAGCCAATGGAAGAAACAGGGGACTTCAAAAGCTCCAATAATGTTTCACTTGAATTGCCATTGATGGACACTCATACTGAGGATAAAGCATCAAATGGAGGTTCAAGCAATGAGGCCAGTGGGAGAAAGAGAAGTGCAGCAACAAAATCTGATGATGGTAGCTGTGTTGTTGAGCAACCATGTGGGAAAAGATGTGGCAACAAGTTGAGGAAAGCCAAGTTGTCAGAAATGCTTGACTTGAACAGCCAATGTCAGAGTGACATGGACTCAACAAGTTCAAAAACATTTGACTTAAATTGCAGTTTAAACTTTTGGGAACCATGA 1044 0.4243 MDLQNMQNQSMHFVLSTDAKPRLKWTPELHQRFIEATTQLGGADKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQQLETCSNNKQEDYIETKSSDGHCSREISLGAQNQITENMQIAQALQMQMEAQRKLYEQIEVQKHLQLRIEAQGKYLQSVLKKAQEALAGYNSSPVGIELTKAELSQLVTIINNACPSSPISELTETRGVSLNCGERKRDTGTMCSLESSLTSSESSGGKEEKQPMEETGDFKSSNNVSLELPLMDTHTEDKASNGGSSNEASGRKRSAATKSDDGSCVVEQPCGKRCGNKLRKAKLSEMLDLNSQCQSDMDSTSSKTFDLNCSLNFWEP 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1586 347 MobiDBLite consensus disorder prediction 221 236 - -
Ssu2g1586 347 Gene3D - 19 77 - -
Ssu2g1586 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 77 IPR017930 -
Ssu2g1586 347 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 5 344 IPR044848 GO:0003700
Ssu2g1586 347 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 5 344 - -
Ssu2g1586 347 Pfam Myb-like DNA-binding domain 22 73 IPR001005 -
Ssu2g1586 347 Coils Coil 120 140 - -
Ssu2g1586 347 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 20 75 IPR006447 GO:0003677
Ssu2g1586 347 MobiDBLite consensus disorder prediction 268 283 - -
Ssu2g1586 347 Pfam MYB-CC type transfactor, LHEQLE motif 117 163 IPR025756 -
Ssu2g1586 347 MobiDBLite consensus disorder prediction 220 295 - -
Ssu2g1586 347 SUPERFAMILY Homeodomain-like 19 75 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1586 Ssu-Chr2 63707309 63708864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1586 11 304 G2-like Transcription Factor Family AT1G69580 47.682 4.65e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu2g1586 Myb_DNA-binding 5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1586 - - gmx:100787178 604.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1586 2 63707309 63708864 Ssu2g1586 2 63707309 63708864 ECH