Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1582 ATGGGAATAATGGCCTATGCAGACATGATGGGGTCTCTCTCTCTTGCCTCCAACTATGCCACACTTTCAAATGCTTCTTCATCTCAAGAGAGCTATGGCTATGCCTCTGGGGTGGAAAATGGGAGGACCACAAGCTGGACTTTTCCTTTCATGAGGGAGTTTCTTTCCTCGAACTTTGAAGATTGCAGTGATGTTGGGGTTGGGGAGAGTAACAGTAGTGAGAAAATAAAGCATAGTGAGAAGTTCAATGAAGAAACCAACCCTAATGAAAACCTTGTCAGTGGCAAAGAGGTAGATAGTGGACACTCGAAACTGTGTGCAAGAGGGCATTGGAGGCCTGCAGAAGATGCCAAGCTGAAGGAACTTGTGGCTCTTTATGGACCTCAGAATTGGAACCTCATAGCTGAAAAACTAGAAGGAAGATCAGGGAAGAGTTGTAGGCTGAGGTGGTTCAACCAGTTGGATCCAAGGATCAACAGAAGGGCTTTCAgtgaagaggaggaggagaggcTAGTGCAGGCACATAGAATTTATGGCAACAAATGGGCAATGATTGCAAGGCTTTTCCCTGGGAGAACAGATAATGCAGTGAAGAATCACTGGCATGTTATAATGGCTAGGAAGTACAGGGAACAATCCAGTGCTTACAGGAGGAGGAGAATGAACCAATCTGCTTACAGAAGAGTGGAGCAAAATCCAAGCTTTCTTTGCAGCAGAGATAATGCCTCAACAACAGAACCAGAACCATCACCTTCCTATTGTCCCAATCTCCTCCACAATGGAGTAGCACTCACCAATAACATGCCTAGTTTTCCATCCTTCCATGGAGTAGCTGCTGGGGTTGTTGAGTTTGGCTTAAATGGTTCTCCACAAAACATGAATGGTGGGAGAGAAGCAATGTCAAACACCCCACATGTTGGATTGTGTGCTCAACAAGCACCTTTTGCTTTCTTCTCTGGTGGTAGAAGCAGTGACATGATGGGAGAGTCCACGAGCCAGATCAGATGCAGGGAAAGGACCAATGAATCTCATAATCATCATTCCCAAATATCTGGTTTCTACCTTCATTATCCCCAACAATATTTGATGGCAATGCAACAGCTAGACAACAACAATCACAACAATTTTTACAGGTTTCTTGAATTCCTCCTCAGCATCAACAACCACAGCCAGGGaaccatcatcatcaccatctgCTGCAGAAATCAGAGATAA 1215 0.4313 MGIMAYADMMGSLSLASNYATLSNASSSQESYGYASGVENGRTTSWTFPFMREFLSSNFEDCSDVGVGESNSSEKIKHSEKFNEETNPNENLVSGKEVDSGHSKLCARGHWRPAEDAKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLVQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRMNQSAYRRVEQNPSFLCSRDNASTTEPEPSPSYCPNLLHNGVALTNNMPSFPSFHGVAAGVVEFGLNGSPQNMNGGREAMSNTPHVGLCAQQAPFAFFSGGRSSDMMGESTSQIRCRERTNESHNHHSQISGFYLHYPQQYLMAMQQLDNNNHNNFYRFLEFLLSINNHSQGTIIITICCRNQR 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1582 404 ProSiteProfiles Myb-like domain profile. 108 154 IPR001005 -
Ssu2g1582 404 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 154 IPR017930 -
Ssu2g1582 404 SUPERFAMILY Homeodomain-like 108 201 IPR009057 -
Ssu2g1582 404 PANTHER MYB PROTEIN-RELATED 4 374 - -
Ssu2g1582 404 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 155 209 IPR017930 -
Ssu2g1582 404 CDD SANT 162 202 IPR001005 -
Ssu2g1582 404 SMART sant 107 156 IPR001005 -
Ssu2g1582 404 SMART sant 159 207 IPR001005 -
Ssu2g1582 404 Pfam Myb-like DNA-binding domain 160 203 IPR001005 -
Ssu2g1582 404 Pfam Myb-like DNA-binding domain 108 154 IPR001005 -
Ssu2g1582 404 PANTHER MYB TRANSCRIPTION FACTOR 4 374 - -
Ssu2g1582 404 MobiDBLite consensus disorder prediction 70 98 - -
Ssu2g1582 404 MobiDBLite consensus disorder prediction 71 85 - -
Ssu2g1582 404 CDD SANT 111 152 IPR001005 -
Ssu2g1582 404 Gene3D - 108 159 - -
Ssu2g1582 404 Gene3D - 161 232 - -
Ssu2g1582 404 ProSiteProfiles Myb-like domain profile. 155 205 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1582 Ssu-Chr2 63570329 63571964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1582 101 233 MYB Transcription Factor Family AT1G69560 80.741 1.33e-75 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu2g1582 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1582 K09422 - gmx:100776292 589.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1582 2 63570329 63571964 Ssu2g1582 2 63570329 63571964 ECH