Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1581 ATGGTCGTGAGGTCCCCTGGCCTGTTGACCTTCAGCGTTGAAAAGAATTTGGGGCCCAAGGCGGAGTTTTTCTTGAAGGAGATGAATGGGGACGTTGCCCAGCTCAAGAGGTTTCCGCAGTACTTCTCTTTTAGCTTGGAACGGAGGATCAGGCCGAGGCACCGGATGCTGAGCCAGGTTGGCGTGTCGCTGCCCTTGGAAGATATGTTGAAGGTTAGTGATGGAGGGTTTAGTGACAGATTGCTTGAGTTGAGGTTTAAGACACTTGAGGTAGGAGCAGGACAACGGTTGTAG 294 0.5204 MVVRSPGLLTFSVEKNLGPKAEFFLKEMNGDVAQLKRFPQYFSFSLERRIRPRHRMLSQVGVSLPLEDMLKVSDGGFSDRLLELRFKTLEVGAGQRL 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1581 97 PANTHER TRANSCRIPTION TERMINATION FACTOR MTEF1, CHLOROPLASTIC 1 90 - -
Ssu2g1581 97 PANTHER CGI-12 PROTEIN-RELATED 1 90 IPR003690 GO:0003690|GO:0006355
Ssu2g1581 97 SMART mt_12 32 63 IPR003690 GO:0003690|GO:0006355
Ssu2g1581 97 SMART mt_12 1 31 IPR003690 GO:0003690|GO:0006355
Ssu2g1581 97 Pfam mTERF 1 77 IPR003690 GO:0003690|GO:0006355
Ssu2g1581 97 Gene3D Transcription termination factor 3, mitochondrial 1 91 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1581 Ssu-Chr2 63533361 63533654 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Ssu2g1581 mTERF 3.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1581 K15032 - gmx:100785219 157.532