Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1579 ATGGGCAGGGTAAAGCTCAAGATTAAGAGGTTAGAGAACACAAATGGTCGTCTCGCAACCTATGCTAAAAGAAAGAACGGAATCATGAAGAAAGCTACTGAGTTATCTATACTTTGTGATATAGATATTATACTTGTTATGTTCTCACCGAGTGGAAAGCCTTCATTATGTAGGGGAAAGCACAgTAGCTTTGAGGAGGTTATCATAAAGTTTGCTCAACTAACTCCACAAGAAAGAGCAAAAAGGAAGTTGGAGAGTCTTGAAGTATTgaagaaaacatttaaaaagttaGAACATGATGTGAATATACAAGATTTTTTGGGTACAAGGTATGCTGTCTTTATTCAGGACCTATATGATCAAGCCAGGCTATTACAGACACATATTTATGAAATACACAAAAGATTAAGTTATTGGACTGACCTTAGTAAAATCAATAGTGTGGAACAATTGGGACAAATGGAAAATTCACTCAAGGAGTCACTTAATCAAATTAGAAGTCATAAGgaaaatatacaaaagcaaCAAATTGCATCACCACAATATAATAACcagTTCAACAAAATGCATGTTCCCTTTAGAATGAATGCTCAGCAACATCTCCAACCTTTATCATGGATTACTAATGGTGACAACCAAAATCTAGTTCTACCCGAGGACTCAAACATGCTTCTTCataaaGATATAGAAGGCTCAACAAGCTATTCTTTTGGGAGTTATGACAGTTATCTTGGCTCTAGTACCAAAATAGATATTTCAATTTCTAAACAAGAAAGTGGTGTCCTTAATGACTTGAGCAATACCTCTCCTATGAGATTACAAGTTCCATACCTACCAAACAACTGTGATTTACTAAATGAAATGAAGGTCCAACTAACTCCAGAGATGAAGTCACATGAAAATCATGTGGATTATCATGTGAATGGAGGTTTCGAAGCACTTAGGACCGAGTATGACTCTAACCATAAAGGATGGACTTCCACATCAGGGCCTTGTGCTATTACTATGTTTGATGAGCATTTGTATACCCAAGCAAGTTTTCCTCCACTACATTTTGGCTTCACATAG 1068 0.3511 MGRVKLKIKRLENTNGRLATYAKRKNGIMKKATELSILCDIDIILVMFSPSGKPSLCRGKHSSFEEVIIKFAQLTPQERAKRKLESLEVLKKTFKKLEHDVNIQDFLGTRYAVFIQDLYDQARLLQTHIYEIHKRLSYWTDLSKINSVEQLGQMENSLKESLNQIRSHKENIQKQQIASPQYNNQFNKMHVPFRMNAQQHLQPLSWITNGDNQNLVLPEDSNMLLHKDIEGSTSYSFGSYDSYLGSSTKIDISISKQESGVLNDLSNTSPMRLQVPYLPNNCDLLNEMKVQLTPEMKSHENHVDYHVNGGFEALRTEYDSNHKGWTSTSGPCAITMFDEHLYTQASFPPLHFGFT 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1579 355 CDD MADS 2 54 - -
Ssu2g1579 355 Coils Coil 151 178 - -
Ssu2g1579 355 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ssu2g1579 355 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Ssu2g1579 355 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Ssu2g1579 355 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ssu2g1579 355 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ssu2g1579 355 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ssu2g1579 355 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1 1 345 - -
Ssu2g1579 355 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 345 - -
Ssu2g1579 355 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Ssu2g1579 355 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1579 Ssu-Chr2 63521276 63528353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1579 1 348 Type I MADS-box Gene Family AT2G03060 46.214 7.20e-99 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ssu2g1579 SRF-TF 1.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1579 - - lang:109356063 513.842