Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1578 ATGAAAATGTCATCACCCATGTGCGGGCGATTAGTAACCGTCCGTGAGCGCAAAGGAGACCCACAACACAGAGATAGGCCTGTAGCTGTGAGCCTATCTAATGTTATTATTGGATCAGTGAAGGTAGGAAAAGGGAAAATGGGGCTCATTGGCTTGCTCTTGGTGGTGCTTTTCACAGTGTTCTCCTCTGCCTATGGCTATGGgtatggtggtggtggctggGTTAATGCACATGCTACCTTCTATGGAGGGAGTGATGCATCAGGAACAATGGGTGGGGCTTGTGGATATGGGAACCTCTACAGCCAGGGATATGGAACAAACACTGCTGCTCTGAGCACTGCTTTGTTCAATAATGGACTGAGCTGTGGTTCATGCTATGAGATCAGGTGTGCGAATGACCACAGGTGGTGCCTGCCTGGCTCCATTTTGGTCACTGCCACCAATTTCTGCCCACCAAACAATGCCTTGCCCAACAATGCAGGGGGGTGGTGTAACCCTCCTCTGCACCATTTTGACCTATCTCAGCCTGTCTTCCTGCACATTGCACAATACAGAGCTGGAATTGTGCCTGTGGCTTACAGAAGGGTACCCTGCAGGAGAAGGGGAGGCATAAGGTTCACCGTCAATGGTCACTCCTACTTCAACTTGGTCCTCATAACAAACGTAGGTGGTGCTGGGGATGTGCATTCTGTGGCCATCAAAGGGTCCAGAACTGGATGGATGCCAATGTCAAGGAACTGGGGTCAGAACTGGCAGAGCAACAACTATCTCAATGGCCAAAGCCTCTCCTTCAAGGTCACCACTAGTGATGGCCGTACTGTGGTGTCTAACAATGTTGCCCCAGCTGGGTGGTCCTTTGGCCAAACATACGCTGGTGCTCAATTCCGCTAG 894 0.4966 MKMSSPMCGRLVTVRERKGDPQHRDRPVAVSLSNVIIGSVKVGKGKMGLIGLLLVVLFTVFSSAYGYGYGGGGWVNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCANDHRWCLPGSILVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPVFLHIAQYRAGIVPVAYRRVPCRRRGGIRFTVNGHSYFNLVLITNVGGAGDVHSVAIKGSRTGWMPMSRNWGQNWQSNNYLNGQSLSFKVTTSDGRTVVSNNVAPAGWSFGQTYAGAQFR 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1578 297 PANTHER EXPANSIN-A15 53 296 IPR002963 GO:0009664
Ssu2g1578 297 SUPERFAMILY Barwin-like endoglucanases 53 222 IPR036908 -
Ssu2g1578 297 Gene3D - 63 200 IPR036908 -
Ssu2g1578 297 Pfam Expansin C-terminal domain 205 282 IPR007117 -
Ssu2g1578 297 Gene3D - 204 296 IPR036749 -
Ssu2g1578 297 Pfam Lytic transglycolase 109 194 IPR009009 -
Ssu2g1578 297 PRINTS Expansin/Lol pI family signature 187 203 IPR007118 GO:0005576
Ssu2g1578 297 PRINTS Expansin/Lol pI family signature 113 131 IPR007118 GO:0005576
Ssu2g1578 297 PRINTS Expansin/Lol pI family signature 91 109 IPR007118 GO:0005576
Ssu2g1578 297 PRINTS Expansin/Lol pI family signature 73 88 IPR007118 GO:0005576
Ssu2g1578 297 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576
Ssu2g1578 297 PRINTS Expansin/Lol pI family signature 279 293 IPR007118 GO:0005576
Ssu2g1578 297 PANTHER EXPANSIN 53 296 - -
Ssu2g1578 297 PRINTS Expansin signature 143 153 IPR002963 GO:0009664
Ssu2g1578 297 PRINTS Expansin signature 203 215 IPR002963 GO:0009664
Ssu2g1578 297 PRINTS Expansin signature 131 142 IPR002963 GO:0009664
Ssu2g1578 297 PRINTS Expansin signature 162 179 IPR002963 GO:0009664
Ssu2g1578 297 PRINTS Expansin signature 250 271 IPR002963 GO:0009664
Ssu2g1578 297 PRINTS Expansin signature 179 192 IPR002963 GO:0009664
Ssu2g1578 297 PRINTS Expansin signature 104 118 IPR002963 GO:0009664
Ssu2g1578 297 PRINTS Expansin signature 279 295 IPR002963 GO:0009664
Ssu2g1578 297 PRINTS Expansin signature 215 236 IPR002963 GO:0009664
Ssu2g1578 297 SMART dpbb_1 109 194 IPR007112 -
Ssu2g1578 297 SUPERFAMILY PHL pollen allergen 201 292 IPR036749 -
Ssu2g1578 297 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 214 293 IPR007117 -
Ssu2g1578 297 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 92 204 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1578 Ssu-Chr2 63511984 63514639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1578 45 297 Expansin Gene Family AT2G03090 81.423 2.07e-155 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1578 - - gmx:100796316 476.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1578 2 63511984 63514639 Ssu2g1578 2 63511984 63514639 ECH
Ssu2g1578 2 63511984 63514639 Ssu1g2098 1 59786414 59788616 ECH
Ssu2g1578 2 63511984 63514639 Ssu6g1250 6 20326958 20330194 ECH
Ssu2g1578 2 63511984 63514639 Ssu3g0448 3 10242972 10244079 ECH
Ssu2g1578 2 63511984 63514639 Ssu8g2293 8 59932052 59933496 ECH