Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1568 ATGGAGGGCAGAACAAGCTCTGCACTCCCACCTGGCTTCAGGTTTCACCCCACTGATGAGGAACTAATCGTGTACTACCTTTGTAACCAAGCCACATCAAGGCCATGCCCTGCATCAATCATCTCAGAAGTGGATATCTATAAATTTGATCCATGGGAATTACCTGAAAAAACTGACTTTGGAGAAAATGAATGGTACTTCTTTAGCCCACGAGAGAGGAAGTATCCAAATGGGGTGAGGCCTAACCGAGCAACCGTGTCTGGTTATTGGAAGGCTACTGGCACTGACAAAGCAATCTATAGTGAGTCTAAGCATATTGGGGTGAAGAAAGCTTTGGTCTTTTACAGGGGGAAGCCACCGAAGGGCCTCAAAACAGATTGGATTATGCATGAGTATCGATTAATTGGATCAAGAAGACAAGCCAATAGACAAATTGGATCCATGAGGCTGGATGACTGGGTCTTGTGTAGGATCTATAAGAAGAAGAACATGGGAAAATCAATGGAAGCAAAAGAGGACTACCCAATAGCCCAAATCAATCTTACACCTGCAAATAATGACACTGAACAAGAAATGATGAAATTTCCAAGGACTAGTTCCCTTAATCATCTTTTGGAAATGGATTACTTGGGTCCAATATCACATATTTTATCTGATGGCTCATACAATTCAACCTTTGACTTTCAAATTAACACTGCCAATGGTGGAATAGACCCGCTCGTAAAACCCCAGCTGGTTGAAATGCCTAATAACCCTTATGCATCAGATTCAGAGAAGTACCAAGTGAAACAGAATAGCAGCATCAACCCCACCATATTTGTGAAACAAGCGTATGATCAGAGAGGAAAATaccaataa 858 0.4172 MEGRTSSALPPGFRFHPTDEELIVYYLCNQATSRPCPASIISEVDIYKFDPWELPEKTDFGENEWYFFSPRERKYPNGVRPNRATVSGYWKATGTDKAIYSESKHIGVKKALVFYRGKPPKGLKTDWIMHEYRLIGSRRQANRQIGSMRLDDWVLCRIYKKKNMGKSMEAKEDYPIAQINLTPANNDTEQEMMKFPRTSSLNHLLEMDYLGPISHILSDGSYNSTFDFQINTANGGIDPLVKPQLVEMPNNPYASDSEKYQVKQNSSINPTIFVKQAYDQRGKYQ 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1568 285 Gene3D NAC domain 18 166 IPR036093 GO:0003677|GO:0006355
Ssu2g1568 285 PANTHER NAC DOMAIN-CONTAINING PROTEIN 1 1 234 - -
Ssu2g1568 285 PANTHER NAC TRANSCRIPTION FACTOR 56 1 234 - -
Ssu2g1568 285 Pfam No apical meristem (NAM) protein 10 134 IPR003441 GO:0003677|GO:0006355
Ssu2g1568 285 ProSiteProfiles NAC domain profile. 9 161 IPR003441 GO:0003677|GO:0006355
Ssu2g1568 285 SUPERFAMILY NAC domain 5 161 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1568 Ssu-Chr2 63352950 63354096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1568 1 216 NAC Transcription Factor Family AT1G69490 67.544 2.20e-113 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu2g1568 NAM 3.7e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1568 - - gmx:732552 536.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1568 2 63352950 63354096 Ssu2g1568 2 63352950 63354096 ECH