Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1564 ATGGGAAGGGTACCGAGCCGTGAGAAGGAGGGTTTGAAGAAAGGACCATGGACACCGGAAGAAGACAAGAAGCTCGTGGCTTATGTTGAAAAGCATGGCCCCGGAAACTGGCGTTCAGTGCCTGCCAAAGCGGCAGGTCTCGAAAGATGTGGAAAGAGTTGCAGACTGAGGTGGATTAACTACCTCAAGCCTGATATAAAACGAGGAAACTTCAGCATGGAAGAAGACTGCACCATTATTCAACTTCATGCTCTTCTTGGAAACAAATGGTCAATCATAGCAGCTCATCTGCCCAAGAGAACAGACAACGAGATTAAGAACTACTGGAACACCAACATCAAGAAAAGACTCATCAGAATGGGCTTAGATCCCATTACCCACAAACCAATAAAACCAAACACGTTTGAAGCCTATGCTGGTGACCATGACCAGTCCAAGGACACCATCAATATGGGCCACGTGGTTCAGTGGGAGAGTGCTCGACTTGAAGCCGAAGCCAGAGGATCTATATTGCAAGTTGGATCTGCCTCCTTACATCTCCCTCGGCTAGTCTTAAGCAAAATCCCAACTCAACCTAGTTCTTCATTAGATTCACTATCAACCGAACACAAGAGAGTGTATAACATGTATGCCCTTGTGCTTACGACAAATCATGACCTTCGGTCATCGGTATCCACTTTGAGCATCCCCAAGCTTCCTGCAGTCTCTACCAATATTGGACAATTCACCGACACAGAAAGCTCACACGGTAATGTTACAGAAACTAGTAGTCAAATTCAAAAGACAATGGAAGGCTATGTGTCAAACTTGGAGGATGATGACATTATGATGGCTGTGGAAGCATTTAGAACTGCTAGATGTGAGAGTATTCAAGAATTGTTTAACGAATCCACTGCCATGGAAGGTctaatataa 915 0.447 MGRVPSREKEGLKKGPWTPEEDKKLVAYVEKHGPGNWRSVPAKAAGLERCGKSCRLRWINYLKPDIKRGNFSMEEDCTIIQLHALLGNKWSIIAAHLPKRTDNEIKNYWNTNIKKRLIRMGLDPITHKPIKPNTFEAYAGDHDQSKDTINMGHVVQWESARLEAEARGSILQVGSASLHLPRLVLSKIPTQPSSSLDSLSTEHKRVYNMYALVLTTNHDLRSSVSTLSIPKLPAVSTNIGQFTDTESSHGNVTETSSQIQKTMEGYVSNLEDDDIMMAVEAFRTARCESIQELFNESTAMEGLI 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1564 304 SMART sant 67 115 IPR001005 -
Ssu2g1564 304 SMART sant 13 64 IPR001005 -
Ssu2g1564 304 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 210 - -
Ssu2g1564 304 Gene3D - 13 67 - -
Ssu2g1564 304 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Ssu2g1564 304 CDD SANT 16 62 IPR001005 -
Ssu2g1564 304 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Ssu2g1564 304 Gene3D - 70 117 - -
Ssu2g1564 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Ssu2g1564 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Ssu2g1564 304 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Ssu2g1564 304 Pfam Myb-like DNA-binding domain 68 111 IPR001005 -
Ssu2g1564 304 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Ssu2g1564 304 CDD SANT 70 113 IPR001005 -
Ssu2g1564 304 PANTHER TRANSCRIPTION FACTOR MYB106 1 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1564 Ssu-Chr2 63209379 63210520 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1564 1 180 MYB Transcription Factor Family AT3G01140 67.222 1.34e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu2g1564 Myb_DNA-binding 5.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1564 K09422 - gmx:100790887 481.1