Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1563 ATGGGAAGGTCACCATGCTGTGAGAAGACGGGGCTGAAGAAAGGACCATGGACACCGGAGGAAGACCAAAGGCTCATTTCTTTCATCGAAAAGCATGGCCATGGAAGCTGGCGTGCATTGCCTGCAAAAGCTGGCCTTAGAAGATGTGGAAAGAGTTGCAGACTTAGGTGGACTAATTACCTCCGACCTGACATAAAACGAGGAAAGTTTAGCTTGCAGGAAGAGCAAACCATTATTCAACTTCACGCCCTTCTAGGAAACAGATGGTCAGCCATAGCATCTCACTTGCCCAAGAGAACCGACAACGAGATCAAGAACTATTGGAACACCCACCTCAAGAAGAGGCTCGACAAAATGGGCATAGATCCCGCCACCCACAAGCCGAAAATCGAGCGCCTAGGCCCCACCAAAGACGGCTCTAACCTCAGCCACATGGCTCAGTGGGAGAGCGCCCGGCTCGAAGCCGAAGCCAGACTCGCCAGAGAATCCAAGCTGCAAGAAAAAAACAACCTCCGACCCTCAACTAGGCTCGTTCTCAACAAAATCACACCCCAACAACCCTCACTACCACCCTGCCTCGACGTGCTCAAAGCGTGGCAAAGTTCGTGGTCAAACAACAGCTCCAAATCTTCACTAAACGACAAGAAGAACATGATGCATGTGCATAGCACGTGTGCCATGATGCTTGCCACTGACGACCTCGAGTCTCCAACGTCCACGTTGTACTTCCCAGAGAGTACTGTGCAAATGAACAGTAATAATACCAATGCTATGGTCTCAAGTTCAACCAACCCCGTTCGGTTAATCAATGGCAATTATTTACTTCCTCCAACAACTATCACCACCACTGGTTCACTTAATGAGTTTATTACCAAAAGTTTAGGAGCGTGTGGTGAGGGCGCAATCGTGAAGGAGGCTGCACGCGAGAGTGAGTCGTGGGGGTATTTAACCAAACACAGCAATGAAGAACTCGCTGAAATTGAGAGGAGAATAATGTACGACACAATGCCATGTTTGCAAGACGATGACATTATGGTGGCTGTTGAGGCATTAAGAGGTGCGGGTTATGgtaataataatgtaacattTACGTCTCTCTCTGGCAATGTCATGGTAGGTTTCAATAACGATCACGTGCCGGATTTTGATTCCAACGAAGATTTAGTGGCGGAAAACTTGGACGTGATCAATGGGGATGGAAGCGGCTGTGGCGTGAACTTCGAGGAGAATAAGAATTACTGGAATAGCATACTTGGTTATAAGTGA 1266 0.4771 MGRSPCCEKTGLKKGPWTPEEDQRLISFIEKHGHGSWRALPAKAGLRRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIASHLPKRTDNEIKNYWNTHLKKRLDKMGIDPATHKPKIERLGPTKDGSNLSHMAQWESARLEAEARLARESKLQEKNNLRPSTRLVLNKITPQQPSLPPCLDVLKAWQSSWSNNSSKSSLNDKKNMMHVHSTCAMMLATDDLESPTSTLYFPESTVQMNSNNTNAMVSSSTNPVRLINGNYLLPPTTITTTGSLNEFITKSLGACGEGAIVKEAARESESWGYLTKHSNEELAEIERRIMYDTMPCLQDDDIMVAVEALRGAGYGNNNVTFTSLSGNVMVGFNNDHVPDFDSNEDLVAENLDVINGDGSGCGVNFEENKNYWNSILGYK 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1563 421 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu2g1563 421 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ssu2g1563 421 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 419 - -
Ssu2g1563 421 CDD SANT 69 112 IPR001005 -
Ssu2g1563 421 CDD SANT 16 61 IPR001005 -
Ssu2g1563 421 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Ssu2g1563 421 Gene3D - 13 66 - -
Ssu2g1563 421 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 419 - -
Ssu2g1563 421 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ssu2g1563 421 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Ssu2g1563 421 SMART sant 66 114 IPR001005 -
Ssu2g1563 421 SMART sant 13 63 IPR001005 -
Ssu2g1563 421 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ssu2g1563 421 Gene3D - 69 116 - -
Ssu2g1563 421 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1563 Ssu-Chr2 63089561 63092983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1563 1 174 MYB Transcription Factor Family AT3G01140 79.348 1.34e-101 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu2g1563 Myb_DNA-binding 1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1563 K09422 - gmx:100792994 552.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1563 2 63089561 63092983 Ssu2g1563 2 63089561 63092983 ECH