Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1561 ATGGGTAGGGAAATTGTACGGCAAGAATCACCCTTAAAGCCAGGTGAACGCAGTAGATTATGGTTCTCTAAAGATATTCTTCATGTTTTCAAAGAGAACAAGGGATCTGATAAAACTGAAATCATCATGCTAAATCTGCTCAAAGATAAAGCAGTGCAATGGGATGGAAATGCTTTAAAGAAGATGGAAAACCTTAAAATATTGGTTGTAGAAAATGCTCACTTCTCCAAAGGACCTAGTCATCTCCCAAAAAGTTTAAGAGTGCTAAAATGGTGTCAATATCCTGAACCTTTGCTGCCAGCTGATTGTGATCCAAAGAAATTTGTCATACTTGACTTGTCCATGAGTTTCTTTTCATTCGACAATCAATTGATCATGAAATTTAAGTCTTTGTCTGAAATGAAGTTAAGCAGttgcaaattattaaaaaaagtaccTGACTTGTCTGGAGCACCAAATTTAAAGAAACTGCATCTTGATGATTGCAAGAATTTAGTTGAAGTTCATGATTCCATTGGATTTCTTCATAAACTTGAAGTGTTGAATCTTGATTATTGCACCAGTCTCAGGGTTCTTCCTTGTGGCATCAACTTACCTTCTCTTGAAACCCTGTCCCTCAGGATTTGTACAAGTCTCAAGAGTTTTCCAGAAATTTTAGGGAAGATGGAAAACATAAGGTACATTTATTTGAATGACAGTGCCATAAGAAAATTGCCTTTTTCAATTGGAAATCTTGTTGGGCTTACAATGCTGACTCTGAGTGGATGCAACGGGCTACTTGAACTCCCGAGTAGTATTTTTATGTTTCCAAAACTTGAGATCTTGCAAGCTAACAGCTGCAAGGGGCTTGCACAAATAAAAAAGGGCAAAGGTCAAGAGCAAGAAACAACGTCTTCCAACGTGAGAGATGTCGGTTCTTTTCCGTTTGAAAGAAAGGCTAGTTTTGGTCATTGCTGTCTTACAGATGAATTCCTTGCTACCCTTCTTCCTTGCCTGCACCGTGTGACACGGTTATACCTCATGCGTAACAATATCACAATCCTACCATCATGCATCAATGCATGTCACTCTTTGACGGAACTTTATTTGGATGGATGCAAGGAGCTTAGAGAAATCAGAGGGCTGCCGCAAAATATAATTCGTCTTTCAGCAGTAAACTGCACGTCATTGACTTCCCAGTCTAAGGGAATGTTGCTGACTCAGTCGCTGCACAGAACCGGGGATACATGTTTCTGTTTTCCGGTACCAGGATCGACTATCCAGAGTTTGTTCAATCACTGTAGTAGGGGACCATCCCTGTCTTTCTGGTTCCGTGGCAAATTCCCAATGATTACTCTCTGTGTTGTTGGAGCTTTGGATAGTTGTGGGTGCTGTGTGCTCGACCTGTTTGTTAATAGCAGTCAAAAGTTCCccagttatttcaaatttatgacTATTGATGATTCGGTTCAGACAAATCATATTATTCTGTTCAATCTGCAGCTCCAATTTTGCAGTGATGAGTTTGAAACAATGTACACTGTGGATGGCTGGAACCATGCAGAGATTTCATTTTcggaaaatgaaagaaaggatGTTGAATGGATGGGAGTTTATGTGAAGGAACAAAAAACAAGCATGGCAGATATTCGATTTACAAATCCTGAGAAAATGCTCATCCGCCGGATTAATGGATCGTGA 1680 0.3857 MGREIVRQESPLKPGERSRLWFSKDILHVFKENKGSDKTEIIMLNLLKDKAVQWDGNALKKMENLKILVVENAHFSKGPSHLPKSLRVLKWCQYPEPLLPADCDPKKFVILDLSMSFFSFDNQLIMKFKSLSEMKLSSCKLLKKVPDLSGAPNLKKLHLDDCKNLVEVHDSIGFLHKLEVLNLDYCTSLRVLPCGINLPSLETLSLRICTSLKSFPEILGKMENIRYIYLNDSAIRKLPFSIGNLVGLTMLTLSGCNGLLELPSSIFMFPKLEILQANSCKGLAQIKKGKGQEQETTSSNVRDVGSFPFERKASFGHCCLTDEFLATLLPCLHRVTRLYLMRNNITILPSCINACHSLTELYLDGCKELREIRGLPQNIIRLSAVNCTSLTSQSKGMLLTQSLHRTGDTCFCFPVPGSTIQSLFNHCSRGPSLSFWFRGKFPMITLCVVGALDSCGCCVLDLFVNSSQKFPSYFKFMTIDDSVQTNHIILFNLQLQFCSDEFETMYTVDGWNHAEISFSENERKDVEWMGVYVKEQKTSMADIRFTNPEKMLIRRINGS 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1561 559 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 518 IPR044974 GO:0006952
Ssu2g1561 559 PANTHER ARCHAEAL ATPASE 1 518 - -
Ssu2g1561 559 Gene3D Ribonuclease Inhibitor 215 406 IPR032675 -
Ssu2g1561 559 SUPERFAMILY L domain-like 39 403 - -
Ssu2g1561 559 Gene3D Ribonuclease Inhibitor 33 214 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1561 Ssu-Chr2 63000818 63003585 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1561 2 285 WRKY Transcription Factor Family AT4G12020 37.624 3.84e-40 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1561 - - gmx:100814790 664.455