Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1555 ATGAGCAGTGGCGGATCGTCCGGCACGGCGgcgaaggagaaggagaaggagaaggctCGTGTGAGTCGAACGTCGCTAATTCTGTGGCACGCGCACCAAAACGACGCCGCGGCGGTGCGGAAGCTCCTCGAGGAGGATACGTCGCTGGTGCAGGCTAGGGATTACGACAACCGCACGCCACTCCACGTGGCGTCGCTCCACGGCTGGGTCGAGGTCGCCAAGTGCTTGATCGAATTCGGTGCTGACGTAAACGCTCAGGATCGTTGGAAAAACActCCTCTGGCTGATGCAGAGGGAGCTAAGAGAACTGCAATGATTGAGCTTTTGGAGTCACATGGAGGTTTGTCTTATGGCCAAAATGGAAGCCATTTTGAACCGAGGCTTGTTCTTCCCCCGTTGCCTAACAAGTGTGATTGGGAAGTTGACCCTTCTGAGCTGGACTTCTCCAATTCGGTTTGCATTGGAAAGGGATCTTTTGGTGAGATTTTAAAAGCCTATTGGCGTGGAACACCTGTTGCTGTCAAACGTATTCTTCCATCTCTGTCAGATGATAGATTGGTGATTCAGGACTTCAGGCACGAGGTTAATTTACTTGTGAAGCTTCGACACCCTAATGTTGTTCAATTTCTTGGAGCTGTTACTGACAGGAAGCCCCTTATGTTAATTACTGAGTATCTGAGAGGAGGAGATCTTCATAAGTACCTCAAGGACAAAGGTGCACTTAGTCCTTCAACAGCTATCAACTTTGCCTTGGATATTGCGAGGTATGATGTGTCATACCTGaagtttcctttatttttctttttaaatttgtttatagagAGAACAAACAGAAAACCACAAACAAGAGAAACATTAACTCCAAGATCTCTTCAACCTCTTCgtaaatctattatataa 900 0.4433 MSSGGSSGTAAKEKEKEKARVSRTSLILWHAHQNDAAAVRKLLEEDTSLVQARDYDNRTPLHVASLHGWVEVAKCLIEFGADVNAQDRWKNTPLADAEGAKRTAMIELLESHGGLSYGQNGSHFEPRLVLPPLPNKCDWEVDPSELDFSNSVCIGKGSFGEILKAYWRGTPVAVKRILPSLSDDRLVIQDFRHEVNLLVKLRHPNVVQFLGAVTDRKPLMLITEYLRGGDLHKYLKDKGALSPSTAINFALDIARYDVSYLKFPLFFFLNLFIERTNRKPQTRETLTPRSLQPLRKSII 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1555 299 SMART ANK_2a 56 85 IPR002110 GO:0005515
Ssu2g1555 299 ProSitePatterns Protein kinases ATP-binding region signature. 154 175 IPR017441 GO:0005524
Ssu2g1555 299 Pfam Protein tyrosine and serine/threonine kinase 153 255 IPR001245 GO:0004672|GO:0006468
Ssu2g1555 299 Gene3D Transferase(Phosphotransferase) domain 1 140 262 - -
Ssu2g1555 299 PANTHER SERINE/THREONINE-PROTEIN KINASE STY8-LIKE 8 261 - -
Ssu2g1555 299 ProSiteProfiles Protein kinase domain profile. 148 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1555 299 PIRSF ILK 1 265 - -
Ssu2g1555 299 SUPERFAMILY Ankyrin repeat 27 114 IPR036770 -
Ssu2g1555 299 ProSiteProfiles Ankyrin repeat profile. 56 88 IPR002110 GO:0005515
Ssu2g1555 299 Gene3D - 3 124 IPR036770 -
Ssu2g1555 299 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 8 261 - -
Ssu2g1555 299 ProSiteProfiles Ankyrin repeat region circular profile. 56 88 - -
Ssu2g1555 299 SUPERFAMILY Protein kinase-like (PK-like) 147 255 IPR011009 -
Ssu2g1555 299 Pfam Ankyrin repeats (3 copies) 23 87 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1555 Ssu-Chr2 62887376 62889976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1555 2 261 MAP Kinase Kinase Kinase AT1G14000 81.154 9.67e-153 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Ssu2g1555 PK_Tyr_Ser-Thr 9.3e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1555 - - gmx:100789273 477.633