Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1551 ATGGAAGAGGCAGAGGAGTCCACCAATGCTAACCAGAAATTCACCACTAAAAGAAGGAGCTTCAGGAATGGAGGCAACTCTCATGAGCATCATCattatcaccatcaccaccaccatcatcatcaccactaTCAGCACCATCATCAGCTGCTACAATACTCAACTCAGCTTGGTTTCTGCAACAACCAGAACAAGTATCAGAGATACTACCCAGCTCTTCTTCCTCCACCTTCCCTTATACCTCTACAACAACTTCCTTTGACTCCACCCTTCCCTCAAAACGACACCATCAAATCAAAATCCCATTTGCACAAACCTTCGTGCAAACTCAATAGCTCACCCTCCTCAGATTACAAGCTCTCTCAACCACCACTTGCTCCAGCTCCAAAGGAACTTCAGCAGCAAGCTAAGGCATCCTTTAAAGGAGATGATGGGAAGAAACTCATTCCAGCAAGGAAGCCACAGGCAGTAATTGTTGCAAGGAGGCCAGACTCTGGTGGCCAAGAAGGTTCTGTGATCTCTCTTCTTGCCAACCACTTTTTGGTACAGTTTGACCCATCACAAAAGATATATCATTACAATGTTGAGATCACTCCTCATCCCTCCAAGGATGTTGCAAGAGCAATCAAACAGAAGTTGGTAAATAACAATTCTGCAGTACTCTCAGGTGCTACTCCAGCATATGATGGGAGAAAGAATCTTTACAGTCCAGTTGAATTCCAAAATGATAAGCTTGAGTTCTACATAAGCCTCCCAATCCCCACTAGCAAGTTTACATCACCTTATGGAGAAATGTCTGACTTGAAAGAAAAGCATGAACAGCTTAAACTGTTCAGGATAAATATCAAACTAGTCTCAAAGATCAATGGGAAGGAGTTGACTAACTACTTGAGCAAAGAGGGTGATGACTGGATTCCACTTCCACAGGATTATCTACATGCTTTGGATGTAGTTCTTCGGGAAAGTCCAACTGAGAAATGCATATCGGTAGGGAGGTCATTCTATTCGAGTTCAATGGGAAGAAGCAAAGACATTGGTGGAGGAGCTGTTGGATTGAGAGGCTTCTTTCAGAGTCTTAGACCAACACAGCAAGGACTTGCTCTCAATGTGGATTTCTCAGTAACTGCTTTCCATGAGAGCATAGGAGTGATTCCATACTTGCAGAAGCGCCTCGAGTTTCTTCGAGACCTTTCTCAAAGGAAGACAGCTCAATTAAGTGTTGAAGAAAGGAAGGAAGTGGAGAAGGCATTGAAGAACATCAGGGTCTTTGTTTGCCATAGAGAAACTGTTCAGCGATACCGCGTCTATGGCTTAACCGAGGAGGCTACTGAAAACCTGTGGTTTGCTGACAGAGATGGAAAGAATCTGAGGCTTGTGAATTACTTTAAAGATCACTATAACTATGACATACAGTTCAGAAAATTGCCATGCTTGCAAATTAGTAGGAGTAAACCTTGTTATCTCCCTATGGAGCTTTGTGTGATTTGTGAAGGCCAGAAGTTCCTTGGGAAACTATCTGATGATCAAACAGCAAGAATACTCAAGATGGGCTGCCAAAGACCAGGAGAACGAAAAACCATTGTTGAAGGAGTCATGAGAGGAAATGTTGGGCCTACCAGTGGTGACCAGGAAAAAGAATTCAAACTCCAAGTCTCAAGAGAAATGACAAGGTTGACTGGTAGAATTCTTCACCCTCCCAAACTAAAGCTTGGAGATGGAGGTCATGTGAGAAACCTGACTCCTTCGCGTCACGACCGCCAATGGAACCTTCTTGATGGTCATGTCTTTGAAGGAACTACAATTGAAAGGTGGGCACTAATTAGTTTTGGGGGCACACCTGAGCAGAAGTCCAACATCCCCAGATTCATAAACCAGTTATCGCAAAGGTGTGAACAATTGGGCATTTTTCTCAACAAGAGCACAGTTATTAGTCCCCAGTTTGAATCAAGCCAGATTCTTAACAATGTCACCCTTTTGGAATCTAAGCTCAAGAGAATCCAGAGGACTGCCTCAAACAATCTCCAGCTTCTTATTTGCATAATGGAGAAAAAACACAAAGGGTATGCAGACTTGAAAAGAATTGCTGAGACAAGTGTTGGTGTTGTCAGCCAATGCTGCCTGTACCCCAATCTAAACAAGTTGAGTTCACAGTTTTTGGCTAATTTGGCTCTCAAAATCAATGCCAAAGTTGGTGGATGCACAGTTGCCTTGTACAACTCACTGCCTTCTCAAATACCACGCCTCTTTCATATCGATGAGCCGGTGATATTCATGGGTGCAGATGTGACACATCCTCACCCTCTAGATGACTTCAGTCCATCTGTTGCTGCTGTTGTTGGTAGCATGAATTGGCCAACAGCAAACAAATACATTTCAAGAATTAGGTCTCAAACACATAGACAAGAAATCATCCAGGATCTTGGTGCAATGGTGGGGGAATTGCTTGATGATTTTTACCAGGAGGTAGAGAAACTCCCCAGCAGAATCATTTTCTTCAGAGATGGGGTTAGTGAAACTCAGTTTTTGAAAGTGCTGCAAGAGGAACTGCAATCCATCAGGTGTGCATGTTCAAAGTTTCCTGGCTACAAACCTTCCATTACTTTTGCAGTTGTGCAAAAGAGGCATCACACAAGGTTGTTTCCCTTTGAAACTGACCAGTCTTCCCCTCAAAACCATTTTCTATATGAAAACATTCCTCCTGGGACTGTGGTTGATTCTGTAATCACTCATCCAAAGGAATTTGACTTCTATCTATGTAGCCACTGGGGTGTGAAAGGAACAAGTAGGCCAACTCACTACCACGTCTTGTTGGATGAAAACCAGTTTACTTCTGATGAACTTCAGAAACTTGTTTACAACTTATGCTACACTTTTGTTAGGTGTACCAAGCCAATTTCTTTGGTGCCTCCTGCATATTATGCACATTTAGCTGCATATAGAGGCAGACTCTACCTTGAAAGATCAGAGTCCTTAGGTTTGTTCAAAAGCACATCTACACTATCCAGAGCTGCTCCTCCAAAGACAGCACCTCTACCTAAACTTAGTGAAAACATCAAGAAGCTCATGTTCTACTGCTAG 3078 0.425 MEEAEESTNANQKFTTKRRSFRNGGNSHEHHHYHHHHHHHHHHYQHHHQLLQYSTQLGFCNNQNKYQRYYPALLPPPSLIPLQQLPLTPPFPQNDTIKSKSHLHKPSCKLNSSPSSDYKLSQPPLAPAPKELQQQAKASFKGDDGKKLIPARKPQAVIVARRPDSGGQEGSVISLLANHFLVQFDPSQKIYHYNVEITPHPSKDVARAIKQKLVNNNSAVLSGATPAYDGRKNLYSPVEFQNDKLEFYISLPIPTSKFTSPYGEMSDLKEKHEQLKLFRINIKLVSKINGKELTNYLSKEGDDWIPLPQDYLHALDVVLRESPTEKCISVGRSFYSSSMGRSKDIGGGAVGLRGFFQSLRPTQQGLALNVDFSVTAFHESIGVIPYLQKRLEFLRDLSQRKTAQLSVEERKEVEKALKNIRVFVCHRETVQRYRVYGLTEEATENLWFADRDGKNLRLVNYFKDHYNYDIQFRKLPCLQISRSKPCYLPMELCVICEGQKFLGKLSDDQTARILKMGCQRPGERKTIVEGVMRGNVGPTSGDQEKEFKLQVSREMTRLTGRILHPPKLKLGDGGHVRNLTPSRHDRQWNLLDGHVFEGTTIERWALISFGGTPEQKSNIPRFINQLSQRCEQLGIFLNKSTVISPQFESSQILNNVTLLESKLKRIQRTASNNLQLLICIMEKKHKGYADLKRIAETSVGVVSQCCLYPNLNKLSSQFLANLALKINAKVGGCTVALYNSLPSQIPRLFHIDEPVIFMGADVTHPHPLDDFSPSVAAVVGSMNWPTANKYISRIRSQTHRQEIIQDLGAMVGELLDDFYQEVEKLPSRIIFFRDGVSETQFLKVLQEELQSIRCACSKFPGYKPSITFAVVQKRHHTRLFPFETDQSSPQNHFLYENIPPGTVVDSVITHPKEFDFYLCSHWGVKGTSRPTHYHVLLDENQFTSDELQKLVYNLCYTFVRCTKPISLVPPAYYAHLAAYRGRLYLERSESLGLFKSTSTLSRAAPPKTAPLPKLSENIKKLMFYC 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1551 1025 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 112 1024 - -
Ssu2g1551 1025 PANTHER PROTEIN ARGONAUTE 7 112 1024 - -
Ssu2g1551 1025 Gene3D paz domain 374 501 - -
Ssu2g1551 1025 Pfam N-terminal domain of argonaute 173 319 IPR032474 -
Ssu2g1551 1025 SUPERFAMILY Ribonuclease H-like 661 986 IPR012337 -
Ssu2g1551 1025 Gene3D - 748 1025 IPR036397 GO:0003676
Ssu2g1551 1025 SMART PAZ_2_a_3 388 519 IPR003100 GO:0005515
Ssu2g1551 1025 SUPERFAMILY PAZ domain 375 533 IPR036085 GO:0005515
Ssu2g1551 1025 CDD Piwi_ago-like 545 985 IPR045246 -
Ssu2g1551 1025 SMART Piwi_a_2 676 986 IPR003165 GO:0003676
Ssu2g1551 1025 CDD PAZ_argonaute_like 384 496 - -
Ssu2g1551 1025 ProSiteProfiles Piwi domain profile. 676 986 IPR003165 GO:0003676
Ssu2g1551 1025 Pfam PAZ domain 391 513 IPR003100 GO:0005515
Ssu2g1551 1025 Pfam Argonaute linker 1 domain 329 378 IPR014811 -
Ssu2g1551 1025 Pfam Piwi domain 677 983 IPR003165 GO:0003676
Ssu2g1551 1025 MobiDBLite consensus disorder prediction 106 120 - -
Ssu2g1551 1025 ProSiteProfiles PAZ domain profile. 388 497 IPR003100 GO:0005515
Ssu2g1551 1025 MobiDBLite consensus disorder prediction 1 49 - -
Ssu2g1551 1025 Gene3D - 562 738 - -
Ssu2g1551 1025 SMART DUF1785_2 328 380 IPR014811 -
Ssu2g1551 1025 MobiDBLite consensus disorder prediction 28 48 - -
Ssu2g1551 1025 MobiDBLite consensus disorder prediction 84 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1551 Ssu-Chr2 62811826 62816614 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1551 98 1025 Eukaryotic Initiation Factors Gene Family AT1G48410 40.577 0.0 636
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1551 K11593 - gmx:100797755 1904.8