Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1546 ATGGCGGGCGGCGGAAATGGGGGCCGGCAGCCGTGGAAGGAGGCGGCGCCGCCTCGCCCCACCATCAGTCTCCCGCCGCGGTCTGCCGCCATGGAGACCCTTTTTAACGGCGGCTTCAGCCCTGGTCCCATGACTCTTCTCTCTAGCTTTTTGGCTGATGGGGATGACTGCAAGTCCTTCTCTCAGCTCCTCGCCGGAGCTATGGCGTCTCCGGCGGCCGGCGCCGCCGTGCTCGACTCACCTGGCCTCTTTTCACCTTCTCAGGTGTCTTTTGGAATGTCACACCAGCAGGCCCTAGCACAGGTCTCAGCTCAGGCTGCACAACCCAGCTCAAACATGCATATCCAGGCTGAACATTCAGTGTCTGTATCAGTATCACCAGCTACCTCATTGACACAGGTTCCTGCAGCTACTTCCAATACTACTGCACAACAGCTGATGCCACCCTTAACCGCAGACTCTTGGGCCGCAATGACCGAATCCGGCGATCATTCTCACTCGGAGCAAAGACTGCAGTCTTCATCGTTGAATGTTGACAAGCCTGCGGATGATGGCTACAACTGGAGGAAGTACGGGCAGAAACAGGTGAAGGGCAGTGAGTTTCCTCGAAGCTATTACAAGTGCACGCATCCAAGCTGCCCTGTCAAGAAGAAGGTGGAGCGCTCACTTGAGGGCCATGTCACTGCAATTATTTATAAAGGAGAACACAACCATCAACGTCCTCAACCCAACAAGCGCTCGAAAGACGCCACGACTTCAAGTGAAAATTCAAATGTGCAAGGGAATGTAGCTTCAACTTGTCAAGGGACGACTGTGAACTTGATGTCTAAGATGGATCCGGAGTCAAGTCAGGCAACGGCTGATCGTCTATCAGGAACAAGCGACAGTGAGGAAGTAGGTGATCATGAAACTGAAGTGGATGAGAGAAATGTTGAGCCTGACCCCAAGAGGAGAAAAACAGAAGTCACGCACTCTGATCCGGCTTCTTCACATAGGACTGTCACCGAGCCTAGAATCATTGTGCAAACGACAAGTGAAGTTGATCTCTTGGATGACGGGTATAGATGGCGAAAATATGGGCAGAAAGTTGTCAAAGGCAACCCTTATCCTAGGAGCTATTACAAATGCACAACCCCAGGTTGTAATGTCCGGAAGCACGTGGAGAGGGCTTCAACAGATCCTAAAGCTGTCATAACAACATATGAAGGAAAACACAATCATGATGTGCCAGCAGCTAAGACCAACAGCCACGCTATGGCCAGCAACACTGCATCACAGTTAAAATCACAGAATACCAATCCTGAGAAGCATAGTTTTGGCAGCAGAGGTATTGGGGGCAATGAGCAACAGCCGGTCGCACGCCTGCGGTTGAAGGAAGAGCAGATAGCCTAG 1392 0.5201 MAGGGNGGRQPWKEAAPPRPTISLPPRSAAMETLFNGGFSPGPMTLLSSFLADGDDCKSFSQLLAGAMASPAAGAAVLDSPGLFSPSQVSFGMSHQQALAQVSAQAAQPSSNMHIQAEHSVSVSVSPATSLTQVPAATSNTTAQQLMPPLTADSWAAMTESGDHSHSEQRLQSSSLNVDKPADDGYNWRKYGQKQVKGSEFPRSYYKCTHPSCPVKKKVERSLEGHVTAIIYKGEHNHQRPQPNKRSKDATTSSENSNVQGNVASTCQGTTVNLMSKMDPESSQATADRLSGTSDSEEVGDHETEVDERNVEPDPKRRKTEVTHSDPASSHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHNHDVPAAKTNSHAMASNTASQLKSQNTNPEKHSFGSRGIGGNEQQPVARLRLKEEQIA 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1546 463 MobiDBLite consensus disorder prediction 158 180 - -
Ssu2g1546 463 MobiDBLite consensus disorder prediction 416 463 - -
Ssu2g1546 463 PANTHER WRKY TRANSCRIPTION FACTOR 58-RELATED 14 74 - -
Ssu2g1546 463 MobiDBLite consensus disorder prediction 246 265 - -
Ssu2g1546 463 MobiDBLite consensus disorder prediction 416 438 - -
Ssu2g1546 463 PANTHER WRKY TRANSCRIPTION FACTOR 58-RELATED 75 462 - -
Ssu2g1546 463 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 75 462 IPR044810 GO:0003700
Ssu2g1546 463 MobiDBLite consensus disorder prediction 231 265 - -
Ssu2g1546 463 ProSiteProfiles WRKY domain profile. 183 241 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu2g1546 463 ProSiteProfiles WRKY domain profile. 345 410 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu2g1546 463 MobiDBLite consensus disorder prediction 278 336 - -
Ssu2g1546 463 SUPERFAMILY WRKY DNA-binding domain 180 241 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu2g1546 463 Gene3D WRKY domain 159 242 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu2g1546 463 Gene3D WRKY domain 335 411 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu2g1546 463 SUPERFAMILY WRKY DNA-binding domain 342 410 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu2g1546 463 MobiDBLite consensus disorder prediction 1 26 - -
Ssu2g1546 463 MobiDBLite consensus disorder prediction 158 189 - -
Ssu2g1546 463 SMART WRKY_cls 350 409 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu2g1546 463 SMART WRKY_cls 182 240 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu2g1546 463 MobiDBLite consensus disorder prediction 278 293 - -
Ssu2g1546 463 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 14 74 IPR044810 GO:0003700
Ssu2g1546 463 Pfam WRKY DNA -binding domain 183 239 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu2g1546 463 Pfam WRKY DNA -binding domain 351 407 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu2g1546 463 MobiDBLite consensus disorder prediction 294 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1546 Ssu-Chr2 62720605 62725866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1546 19 462 WRKY Transcription Factor Family AT2G03340 52.115 3.84e-153 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu2g1546 WRKY 1.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1546 - - gmx:100127369 783.867