Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1544 ATGTCAGACGAGGAACACCACTTCGAGTCAAAGGCTGATGCTGGGGCATCAAAGACATTTCCCCAGCAAGCTGGAACCATCCGCAAAAATGGTTACATTGTCATCAAGAACAGGCCATGCaagGTTGTGGAGGTTTCAACTTCCAAAACTGGAAAGCACGGACACGCAAAGTGTCACTTTGTTGGAATTGACATCTTCACTGGCAAAAAGCTTGAGGATATTGTCCCATCTTCCCATAACTGTGATGTTCCTCATGTCAATCGCACTGACTACCAGCTCATCGATATCTCAGAGGATGGATTTGTGAGTCTGCTGACTGAGACTGGTGGTACTAAGGATGACCTTAGGCTTCCAACCGATGAAAATCTGCTTTCGCAGATCAAGGATGGATTTGCTGAGGGCAAAGATCTGGTTGTGTCTGTCATGTCTTCCATGGGTGAGGAGCAGATTTGTGCCCTTAAGGACATTGGCCCCAAGTAA 480 0.4667 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTETGGTKDDLRLPTDENLLSQIKDGFAEGKDLVVSVMSSMGEEQICALKDIGPK 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1544 159 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Ssu2g1544 159 PANTHER BNAA07G09420D PROTEIN 1 156 - -
Ssu2g1544 159 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Ssu2g1544 159 CDD S1_eIF5A 86 156 - -
Ssu2g1544 159 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Ssu2g1544 159 Gene3D - 86 158 IPR012340 -
Ssu2g1544 159 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Ssu2g1544 159 Gene3D - 1 85 IPR014722 -
Ssu2g1544 159 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 156 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Ssu2g1544 159 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Ssu2g1544 159 MobiDBLite consensus disorder prediction 1 21 - -
Ssu2g1544 159 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Ssu2g1544 159 TIGRFAM eIF_5A: translation elongation factor IF5A 18 153 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1544 Ssu-Chr2 62685553 62687388 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1544 1 159 Eukaryotic Initiation Factors Gene Family AT1G13950 88.050 1.62e-102 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1544 K03263 K02180 gmx:113001159 322.398