Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1507 ATGGTTGCAAGGCAAGGCGTTGCTCATCTTGGGCTAAGAAAATTCATGGAAGTGCTGAAAGATTTTCAGCAGTCATTGATTAGGGTCTTGGCCAATGCTTTTCTTCTTGTGAGTTACTATACCATAATATCCAAGTACTATGGCAACAGAGAATCTTCATCACAAAGTGGAGACCACAAAGCAAATGTTGAATTGGAAGAGGATCATAACCCTTCACTCCACGAGCCTTGGCATGACCTAACCATTGGCTTAGATGAGGCTTTGATTAAGTCCATAACAATTTGCAAGTACAAGAAAGGTGATGGATTGGTTGAGGTAATAGATTGCCCCACTTGTCTCAATGAGTTTCATGGTTTCAAGATGATGAAAGTGCTAAACACTGTGGAAGAAGGAGTCACACATGGTGGAGCAGTTCAAAAGACAACATTGCATGCTTTGAGTGATCTTGGAAGTTCAAAATGCAGAGACgagtga 474 0.4072 MVARQGVAHLGLRKFMEVLKDFQQSLIRVLANAFLLVSYYTIISKYYGNRESSSQSGDHKANVELEEDHNPSLHEPWHDLTIGLDEALIKSITICKYKKGDGLVEVIDCPTCLNEFHGFKMMKVLNTVEEGVTHGGAVQKTTLHALSDLGSSKCRDE 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1507 157 PANTHER E3 UBIQUITIN-PROTEIN LIGASE OS04G0590900-LIKE 25 126 - -
Ssu2g1507 157 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 25 126 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1507 Ssu-Chr2 61974637 61978760 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1507 25 125 C3H Transcription Factor Family AT3G03550 40.000 3.58e-16 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1507 - - gmx:100792267 150.214