Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1487 ATGCAGTTCTCGAAGAAATGGGTTTTTGGAGTGAACAAGCAGATTTCGTTTAAGAGGGAAATGAGTCAAGAAAGTAAGGTAAATGGGTCTGCAAGATTaccaaaattgcatttgaagaagaaagagagagttcTGTCACCTTCCTCTCAGACAGCAAGGttgGATAAAGATTGgcgaaaaatatttttcttcatcaagttattgaagatgGACATCAAGAgACGGTTTGACATTTTTTCTTTGTCTGGTTCCTTTATGCCAACTGAGAATGGAGTTACAAGAAGCAGATCTGGTGGGATGAGTGTCTCTTTGGCTAGTCCAGATCGTCGAGTAATAGGGGGTGGACATACTGGTTTGTTGGTAGCTGCTGGTCCAGTGCAGAAGCAAAGGGTGGAGCATATATCAACTATTACCTCTAGACCTGTTAATCTTATCAATAATGAGGAAATAAAAGTTAGTTTTGGTGGAGTAAAGCCTATTATGACACCTGCTGCTTTTCAAGAAGAGAATATTGCTTCTTTTAACAATGGTCAAGACTCTAAGAACTCATCTGCTGATGATAAAGATACTTTACCTGAAATGGAATCTAACGCACGCTGCGAAATCAAATTGGATATGCATATACCACAAAGAAAATTTCACTCCAATGTTCTACTATTGCAATCAATTCCACTAGGCaagtaa 684 0.3494 MQFSKKWVFGVNKQISFKREMSQESKVNGSARLPKLHLKKKERVLSPSSQTARLDKDWRKIFFFIKLLKMDIKRRFDIFSLSGSFMPTENGVTRSRSGGMSVSLASPDRRVIGGGHTGLLVAAGPVQKQRVEHISTITSRPVNLINNEEIKVSFGGVKPIMTPAAFQEENIASFNNGQDSKNSSADDKDTLPEMESNARCEIKLDMHIPQRKFHSNVLLLQSIPLGK 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1487 227 SUPERFAMILY AF0104/ALDC/Ptd012-like 72 140 - -
Ssu2g1487 227 CDD DUF296 70 127 IPR005175 -
Ssu2g1487 227 Pfam Plants and Prokaryotes Conserved (PCC) domain 68 127 IPR005175 -
Ssu2g1487 227 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 75 195 - -
Ssu2g1487 227 Gene3D - 28 143 - -
Ssu2g1487 227 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 75 195 IPR039605 GO:0003680
Ssu2g1487 227 MobiDBLite consensus disorder prediction 174 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1487 Ssu-Chr2 61664956 61667337 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1487 70 127 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 70.690 4.88e-20 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1487 - - gmx:100789179 196.438