Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1452 ATGCTCAACTCGAGGCAATCCTTGTAcatctcttcctcttcttctcttttcccttcttcttcttctgcatTGTTTAGTAGTATCATTCTCCTCCAAGTTACACTTCTCTATGGCCTTGCCTTCTCTGCCAACCATGAAGCCTCAACTCTCTTATCTTGGCTCCATACTCCTTCTGCATCACCACCCCCTCCATCTTTCTCTAACTGGAACATCCTTGATCCTAATCCATGCAACTGGACATCCATAACATGCTCCTCACTAGGCTTTGTCACTGAAATCAACATTCAATCCATCCCTCTTGACCTTCCCATACCCTCCAACCTCTCTTCATTTCACTCTCTCCAAAAGCTTGTCATTTCTGATGCCAATCTCACTGGAACCATCCCTTCAGACATTGGTGACTGCTCTTCCCTCTGTGTGATTGACCTCAGCTCCAACAACCTCGTTGGCTCTATTCCTACAACCATTGGCAGGCTCCAGAACCTTCAGAACTTGTCTTTGAACTCCAACCAGCTTACCGGAAAAATCCCAGTTGAGTTAAGCAACTGCATTGGCCTAAAAAATCTACTCCTTTTTGATAATCAGATAAGTGGGCCTATCCCACCTGAGTTGGggaagttgtcacaacttgagTCCCTAAGAGCAGGAGGGAACAAAGATATAGTTGGGAAGATTCCTGAAGAGCTTGGAGAATGCAGCAATTTGACTGTGTTGGGGCTGGCTGATACCAGAATATCTGGTTCTTTGCCTGCTTCTTTGGGTAGGCTTAGCAAGCTTCAGACACTGTCCATCTATACTACCATGCTATCTGGTGAAATTCCACCTGAGTTAGGTAACTGTTCTCAACTTGTTGACTTGTTCCTGTATGAAAATAGCCTATCAGGGTCTATTCCATCTGAGCTTGGTAAGCTCAAGAAGCTGGAACAGTTGTTTTTATGGCAGAATGGTCTTGTGGGGGCCATCCCAGAAGAGATTGGTAACTGTACAAGCTTGAGAAAAATTGATTTCTCTTTGAATTCTCTATCTGGGACTATACCTTTGTCTTTGGGGGGTCTTTTGGAACTTGAAGAGTTTATGATTAGTGATAACAATGTGTCTGGTTCAATCCCTTCCAGTCtttcaaatgttaaaaatctTCAACAGTTGCAAGTTGACACAAACCAGCTCTCAGGCTTGATTCCAGCAGAGCTTGGGCAGTTGTCAAACCTCATGGTGTTCTTTGCTTGGCAGAACCAGCTTGAGGGAAGCATTCCGTCCACTTTGGGGAACTGTAGTAACCTTCAAGAACTAGACTTGTCGCACAATGCACTCACTGGTAGTATTCCTGTTGGCCTAGTCCAGCTCCAAAATCTCACAAAACTGCTTCTGATTTCCAATGACATATCAGGTTTCATACCAAATGAAATAGGCAGTTGCAGCTCTCTTATAAGGTTGAGGCTTGGAAACAATAGGATTACTGGTAGCATTCCCAAGACAATAGGCAACCTCAAGAGCTTGAACTTTTTAGAACTCTCAGGGAACCGCCTCTCCGGGCCTCTTCCTGATGAGATTGGAAGCTGCAGTGAACTGCAAATGATAGACTTCAGCAGTAACAACTTAGAAGGCCCTCTGCCTAATTCTTTGTCTTCATTATCTGCAGTTCAGGTATTGGATGCATCTTCCAACAAGTTTTCAGGTCCTATACCGGTGAGTTTAGGCCGTCTTGTTTCTCTAAGTAAGCTAATCCTAAGTAATAACTTGTTTTCTGGACCAATTCCTGCATCACTGAGCCTATGTTCAAATCTCCAACTGCTTGATCTTAGTAGCAACAAGCTCAGTGGAAGCATACTAGCTGAGCTTGGCCGCATTGAGACACTAGAAATTGCTCTCAATCTTAGTTGCAATTCACTCAGTGGGGCAATCCCAGCTGAGATATCTTCTCTTAACAAGCTTTCCATTCTAGACTTCTCACACAACCAGTTGGAAGGAGATTTGCAGCCTCTTGCATATTTAGACAACCTTGTCTCCCTCAATGTTTCTTACAACAAATTTTCTGGCTGTCTTCCAGATAACAAACTTTTCAGGCAGTTGTCATCAAAAGACTTCACTTCAAATCAAGGGCTCTCATGCTTTGTGAAGGATTCTGGCAAGACTGGTGTGGCACTGAATGGAAATGAGGTAAGGAAGTCGCGAAGGCTTAAGCTAGCCATTGGATTGCTGATAGCCTTAACAGTAATAATGATTGTTATGGGGATAACTGCTGTGATCAAAGCAAGGAGAACCATTAGAGATGAAGATTCAGAATTGGGGGACTCATGGCCATGGAAATTCATACCATTCCAGAAGCTAAACTTTTCAGTGGAACAAGTACTGAGATGCTTAATTGATAGAAACATAATTGGGAAGGGGTGTTCTGGTGTTGTTTATAGAGCTGAAATGGATAGTGGTGAAGTCATTGCTGTGAAGAAATTGTGGCCAACAACAATTAATGATGCAGGAGAGGCATTTAAGGACGAAAAGAGTGGAGTTCGTGACTCGTTCTCAGCCGAGGTCAAGACCCTTGGCTCAATCCGTCATAAGAACATTGTCAGATTCTTGGGGTGCTGTTGGAACAGAAAAACAAGATTGCTTATTTTCGATTATATGCCGAATGGAAGTTTGAGTAGTCTACTTCATGAGAGGACTGGAAACTCTCTGGAATGGGAGCTTAGGTACAGAATCTTGTTAGGTGCTGCAGAAGGCCTTGCATATCTACATCATGACTGTCTCCCTCCTATAGTCCACAGAGATATTAAAGCCAATAACATCCTCATTGGCCTTGAATTTGAACCTTACATTGCTGACTTTGGCTTGGCTAAACTTGTTGATGATGGTGATTTTGGTCGTTCTTCCAATACAGTTGCTGGTTCCTATGGATACATTGCTCCAGAATATGGATATATGATGAAGATCACAGAGAAGAGTGATGTTTACAGCTATGGTGTAGTTTTGTTAGAAGTCTTGACAGGCAAGCAACCAATTGATCCAACCATTCCAGATGGTCTACATGTTGTTGATTGGGTGAGACAGAAAAGGGGTCTTGAAGTGCTTGATCCTAGCTTACTCTCTAGACCAGAATCAGAAATCGAGGAAATGATGCAGGCATTGGGAATAGCTTTATTGTGTGTGAATTCATCCCCTGATGATAGGCCAACAATGAGAGATATCGCTGCAATGCTCAAGGAGATAAAGAATGAAAGGGAGGAGTATGCAAAGTTTGATGTGCTTCTAAAAAGGTCTTCTGCAAATGGTGCATCATGTGGGAATAAAAGCTTCGGTGGAGTTCTGCCAACATCTTCTTCATCAGTACAAGCCATGcaaacttag 3345 0.42 MLNSRQSLYISSSSSLFPSSSSALFSSIILLQVTLLYGLAFSANHEASTLLSWLHTPSASPPPPSFSNWNILDPNPCNWTSITCSSLGFVTEINIQSIPLDLPIPSNLSSFHSLQKLVISDANLTGTIPSDIGDCSSLCVIDLSSNNLVGSIPTTIGRLQNLQNLSLNSNQLTGKIPVELSNCIGLKNLLLFDNQISGPIPPELGKLSQLESLRAGGNKDIVGKIPEELGECSNLTVLGLADTRISGSLPASLGRLSKLQTLSIYTTMLSGEIPPELGNCSQLVDLFLYENSLSGSIPSELGKLKKLEQLFLWQNGLVGAIPEEIGNCTSLRKIDFSLNSLSGTIPLSLGGLLELEEFMISDNNVSGSIPSSLSNVKNLQQLQVDTNQLSGLIPAELGQLSNLMVFFAWQNQLEGSIPSTLGNCSNLQELDLSHNALTGSIPVGLVQLQNLTKLLLISNDISGFIPNEIGSCSSLIRLRLGNNRITGSIPKTIGNLKSLNFLELSGNRLSGPLPDEIGSCSELQMIDFSSNNLEGPLPNSLSSLSAVQVLDASSNKFSGPIPVSLGRLVSLSKLILSNNLFSGPIPASLSLCSNLQLLDLSSNKLSGSILAELGRIETLEIALNLSCNSLSGAIPAEISSLNKLSILDFSHNQLEGDLQPLAYLDNLVSLNVSYNKFSGCLPDNKLFRQLSSKDFTSNQGLSCFVKDSGKTGVALNGNEVRKSRRLKLAIGLLIALTVIMIVMGITAVIKARRTIRDEDSELGDSWPWKFIPFQKLNFSVEQVLRCLIDRNIIGKGCSGVVYRAEMDSGEVIAVKKLWPTTINDAGEAFKDEKSGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRKTRLLIFDYMPNGSLSSLLHERTGNSLEWELRYRILLGAAEGLAYLHHDCLPPIVHRDIKANNILIGLEFEPYIADFGLAKLVDDGDFGRSSNTVAGSYGYIAPEYGYMMKITEKSDVYSYGVVLLEVLTGKQPIDPTIPDGLHVVDWVRQKRGLEVLDPSLLSRPESEIEEMMQALGIALLCVNSSPDDRPTMRDIAAMLKEIKNEREEYAKFDVLLKRSSANGASCGNKSFGGVLPTSSSSVQAMQT 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1452 1114 SMART LRR_typ_2 496 520 IPR003591 -
Ssu2g1452 1114 SMART LRR_typ_2 568 592 IPR003591 -
Ssu2g1452 1114 SMART LRR_typ_2 376 400 IPR003591 -
Ssu2g1452 1114 SMART LRR_typ_2 664 689 IPR003591 -
Ssu2g1452 1114 SMART LRR_typ_2 304 328 IPR003591 -
Ssu2g1452 1114 SMART LRR_typ_2 159 183 IPR003591 -
Ssu2g1452 1114 SMART LRR_typ_2 424 448 IPR003591 -
Ssu2g1452 1114 ProSitePatterns Protein kinases ATP-binding region signature. 793 816 IPR017441 GO:0005524
Ssu2g1452 1114 SMART LRR_sd22_2 520 546 - -
Ssu2g1452 1114 SMART LRR_sd22_2 592 612 - -
Ssu2g1452 1114 SMART LRR_sd22_2 641 666 - -
Ssu2g1452 1114 SMART LRR_sd22_2 304 327 - -
Ssu2g1452 1114 SMART LRR_sd22_2 424 453 - -
Ssu2g1452 1114 SMART LRR_sd22_2 159 180 - -
Ssu2g1452 1114 SMART LRR_sd22_2 352 378 - -
Ssu2g1452 1114 Gene3D Ribonuclease Inhibitor 42 201 IPR032675 -
Ssu2g1452 1114 Gene3D Ribonuclease Inhibitor 622 708 IPR032675 -
Ssu2g1452 1114 ProSiteProfiles Leucine-rich repeat profile. 426 449 IPR001611 GO:0005515
Ssu2g1452 1114 SUPERFAMILY RNI-like 267 615 - -
Ssu2g1452 1114 PANTHER RECEPTOR-LIKE PROTEIN KINASE 2 23 1089 - -
Ssu2g1452 1114 SUPERFAMILY Outer arm dynein light chain 1 623 698 - -
Ssu2g1452 1114 Pfam Leucine rich repeat 402 461 IPR001611 GO:0005515
Ssu2g1452 1114 Pfam Leucine rich repeat 113 172 IPR001611 GO:0005515
Ssu2g1452 1114 Gene3D Phosphorylase Kinase; domain 1 773 874 - -
Ssu2g1452 1114 Gene3D Ribonuclease Inhibitor 538 621 IPR032675 -
Ssu2g1452 1114 Gene3D Ribonuclease Inhibitor 202 442 IPR032675 -
Ssu2g1452 1114 Gene3D Ribonuclease Inhibitor 443 537 IPR032675 -
Ssu2g1452 1114 Gene3D Transferase(Phosphotransferase) domain 1 875 1088 - -
Ssu2g1452 1114 Pfam Protein tyrosine and serine/threonine kinase 791 1065 IPR001245 GO:0004672|GO:0006468
Ssu2g1452 1114 SUPERFAMILY L domain-like 46 312 - -
Ssu2g1452 1114 SUPERFAMILY Protein kinase-like (PK-like) 768 1066 IPR011009 -
Ssu2g1452 1114 SMART serkin_6 787 1070 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1452 1114 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 23 1089 - -
Ssu2g1452 1114 ProSitePatterns Serine/Threonine protein kinases active-site signature. 919 931 IPR008271 GO:0004672|GO:0006468
Ssu2g1452 1114 PRINTS Leucine-rich repeat signature 427 440 - -
Ssu2g1452 1114 PRINTS Leucine-rich repeat signature 592 605 - -
Ssu2g1452 1114 Pfam Leucine rich repeat N-terminal domain 43 85 IPR013210 -
Ssu2g1452 1114 ProSiteProfiles Protein kinase domain profile. 787 1077 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1452 Ssu-Chr2 60100192 60103827 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1452 41 1082 Receptor kinase-like Gene Family AT5G56040 48.723 0.0 970
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ssu2g1452 PK_Tyr_Ser-Thr 1.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1452 - - gmx:100818541 1923.29