Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1446 ATGGAATCTTGGAGTTATGTCCCTGAAGAGAAAGGCTATTTATTTTCTGATGAAATGGATTTTTCACTTGATGCTTTTATGAGAAGTAGAAAAGCATTGGTTGAATGGGACAACAAATCCAACTTTGAGAGAGATGGATTTAATTCAGACAGAGAGGTAGTTAAAAGCATGGAATTTGTGGACTTGGGATTCCCTGACTTGTTGCAAAAGTCTTTTCATGGGAGCCAGCCTCAAGAGACATCTAGCTATGAACTAGATAGTAATTCTAGTAGAAGAGGGAATTCCTCCACACATGTCATTGCTTTGGATTCTTCTTTGGGGGAAGAAGAATCTGTTTCAAAGCACTTTAGTTCTCTAGTTGAAACCAAGACTCATGATTCTTCACTGATTGATCTGAAGCTAGGGAGATTAGCAGATTGTAAAGGTGCAAGCAGTGATAGAGTTGCAAAAGAAGGGTTCACTTTAACATCTACACATCCAACCACTCTTGCGAAGAGAGCTCGCACTTCCAGCTTAGCTGCAAAGGCTCCTGTATGTCAAGTTTATGGTTGTAACATGGATCTTAGCTCCTCAAAAGATTACCACAAAAGGCATAAAGTTTGTGATGTTCACTCCAAGACAGCTAAAGTAATTGTAAATGGCATTGAAAAGAGGTTTTGTCAGCAGTGCAGCAGgttCCATTTGCTAGCTGAGTTTGATGATGGCAAGCGCAGTTGTCGCAGGCGTCTAGCAGGACACAATGAACGCCGAAGGAAACCTCAATTTGATTACATGACTAGTAAACAACACAAGATTCTTCAGTCATTTCAAGGTACTAAGTATCTGGGGTCTTCATTACAGAACAAACCCCAGTTTCCCTTTCGAGACATATTTCAAAGCGGCATCCTTTTCCCCAGAAAGAATGCTCAAATCTCTCAGGGTGCACGTATCAAACTGGAAGAGGACTCAATTTACAGTTCCCAACTTGCTGCACCCGTCACACTTGATCAGGAATTATCGAGCTGTGCTCTCTCTCTTCTGTCAGATCAGTCACAGTATCCATCACGCCACGCAGCAGGAGATCCATTGGCCAGCCCCCGAATCTTTCCTGACATCTGCATGCCCGACAGAGATGACCGAGTTTCTGAAACGCATTTGAGGATAAGCTCTGCGGATAGATGTGCACCAAATGAGTCCTTTCCATGTAATACAACCTCTAAGGAAGTTATCAAGAATAGAGCCGCGACAGTTTCTAACACCGGTCATGCTCTCCAAGTCCATGGAGATGATATTTGCCAACCATCAGACTTGTTCGACGTCAAACATCGAATTTATTCGGAGCATGGAGCCACTGTTGATCTTTTCCAGTTGTCCTCGCATCTTCAGAGGGTGGAGCAGCAAAGAAATTCTGTCTTGGTAAAGTGGGAAAATGAGGACTGCTGTTTCCCAACTGTGTGA 1437 0.4301 MESWSYVPEEKGYLFSDEMDFSLDAFMRSRKALVEWDNKSNFERDGFNSDREVVKSMEFVDLGFPDLLQKSFHGSQPQETSSYELDSNSSRRGNSSTHVIALDSSLGEEESVSKHFSSLVETKTHDSSLIDLKLGRLADCKGASSDRVAKEGFTLTSTHPTTLAKRARTSSLAAKAPVCQVYGCNMDLSSSKDYHKRHKVCDVHSKTAKVIVNGIEKRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKPQFDYMTSKQHKILQSFQGTKYLGSSLQNKPQFPFRDIFQSGILFPRKNAQISQGARIKLEEDSIYSSQLAAPVTLDQELSSCALSLLSDQSQYPSRHAAGDPLASPRIFPDICMPDRDDRVSETHLRISSADRCAPNESFPCNTTSKEVIKNRAATVSNTGHALQVHGDDICQPSDLFDVKHRIYSEHGATVDLFQLSSHLQRVEQQRNSVLVKWENEDCCFPTV 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1446 478 Pfam SBP domain 179 252 IPR004333 GO:0003677
Ssu2g1446 478 MobiDBLite consensus disorder prediction 71 96 - -
Ssu2g1446 478 SUPERFAMILY SBT domain 177 258 IPR036893 GO:0003677|GO:0005634
Ssu2g1446 478 Gene3D - 170 240 IPR036893 GO:0003677|GO:0005634
Ssu2g1446 478 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 330 477 - -
Ssu2g1446 478 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 42 321 - -
Ssu2g1446 478 ProSiteProfiles Zinc finger SBP-type profile. 176 253 IPR004333 GO:0003677
Ssu2g1446 478 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 330 477 IPR044817 GO:0003677
Ssu2g1446 478 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 42 321 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1446 Ssu-Chr2 59981225 59985854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1446 130 345 SBP-box Gene Family AT1G69170 47.107 1.65e-55 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Ssu2g1446 SBP 2.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1446 - - gmx:100820149 833.943