Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1438 ATGGAAAACTCATACAGATTGAATGTAGGAGGTGAGCGAATTCCACCCAAAAATGACACGAGTATGTTTCGCACTTGGGACACCGATGGAGATTACATTTTAGGGGCTAATTTTGGTACTGAATCCTCTAATATGAGCATGCCAGTTTTGTATGCAGATAATGCTCCACCATACTCAGCCCCGGCAAATGTCTACCGCACATCCCGTTCAATGGCCTCTTTTGAAAATCaacttatcaatttaaattacaGTCAGACATGGCTTTTCCCGGTTGATTCAGGTTTCATTTATCTAGTTAGGCTTCACTTCTGTGAGGTTGATCACGATATAACGAAGGAGAATGGGGTAGTTTTTACTGtgtttttacataatcaaacagCTGATAAACAATTTGATCCAATTGCTGTGAGTGGGGGGCCTGGAGTTGCTGTACACCGAGACTATGTTGTTATGGTTCCCCAAGTTAATGAAGGAAAGCAGGATTTGTGGCTTGATCTATATCCAAAAAAGGATTCTAATCCTATATACTATACTGCTTTCTTGAATGGTGTGGAAATCTTCAAACTGAGCAATGTTGATGAGAATCTTGCAGGGCTTAACCCTTCCAAAATCTTCAAGTCTGGATCAGATGTAAAGGCTCCCCATGTTGCAAATTTCAATGAAAGTTCAAAGAAACTCAAATTCATCCTCATTGGATGTGGACTTGGAGCAGTGGTACTACCAATTCTCCTTTGCTTAGTTCTATTCAGGTTAAAGGTGATTAGGCCTAGAAGGGTCATGTCATGGTGCACTCGTGCTGTCCACACTCCTAAGCAAATTGAAAAGGCAAAGAAGTCATCACTTTGCactcatttttcaatgagagagATGAAAGTGGCAACAGGTGACTTCGATGAGGCTCTACTTATTGGCACTGGTGGATTTGGCAGTGTTTACAAGGGTAGCTTTGATGGTGGGGCAACTTACGTGGCCATAAAACGTTCCAATCCAATGTCAGAGCACAACAACCTAGTCTCACTTTTGGGTTATTGCAATGAAGATGGGGAGATGATACTGGTCTACGACTTAATGGCCAATGGAACTCTATATGATCATCTTCATTTGAGGCAGGGAGATCAACCCCCTTTGTCTTGGATTCAACGTCTTGAGATATGCATTGGAGTTGCAAGGGGATTGCAATACCTACACACTGGCACAAAGCACAGGATCATCCACCGTGACATCAAGACAACCAACATACTCTTGGATCATAATTGGGTGcccaaaatttcagattttgggTTGTCAAAAGCAGGCTACCCTTCCTTAGTCACCACCAGCGTCAAGGGTAGCATTGGTTACCTAGATCCTGAGTGCTATCAAAGCCACCAGTTGACTGAGAAATCTGATTTATACTCACATGGAGTGGTGTTATTGGAGGTTCTAAGCGCAAGGCCTGCTGTAAGTCAAGGTGAAAATGATGAGCATGTAAACTTGGCTGAATGA 1485 0.4081 MENSYRLNVGGERIPPKNDTSMFRTWDTDGDYILGANFGTESSNMSMPVLYADNAPPYSAPANVYRTSRSMASFENQLINLNYSQTWLFPVDSGFIYLVRLHFCEVDHDITKENGVVFTVFLHNQTADKQFDPIAVSGGPGVAVHRDYVVMVPQVNEGKQDLWLDLYPKKDSNPIYYTAFLNGVEIFKLSNVDENLAGLNPSKIFKSGSDVKAPHVANFNESSKKLKFILIGCGLGAVVLPILLCLVLFRLKVIRPRRVMSWCTRAVHTPKQIEKAKKSSLCTHFSMREMKVATGDFDEALLIGTGGFGSVYKGSFDGGATYVAIKRSNPMSEHNNLVSLLGYCNEDGEMILVYDLMANGTLYDHLHLRQGDQPPLSWIQRLEICIGVARGLQYLHTGTKHRIIHRDIKTTNILLDHNWVPKISDFGLSKAGYPSLVTTSVKGSIGYLDPECYQSHQLTEKSDLYSHGVVLLEVLSARPAVSQGENDEHVNLAE 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1438 494 PANTHER OS07G0166700 PROTEIN 1 494 IPR045272 GO:0004714|GO:0006468
Ssu2g1438 494 ProSiteProfiles Protein kinase domain profile. 297 494 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1438 494 Gene3D - 2 190 - -
Ssu2g1438 494 SMART serkin_6 297 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1438 494 Gene3D Phosphorylase Kinase; domain 1 330 358 - -
Ssu2g1438 494 ProSitePatterns Protein kinases ATP-binding region signature. 303 326 IPR017441 GO:0005524
Ssu2g1438 494 ProSitePatterns Serine/Threonine protein kinases active-site signature. 403 415 IPR008271 GO:0004672|GO:0006468
Ssu2g1438 494 SUPERFAMILY Protein kinase-like (PK-like) 287 486 IPR011009 -
Ssu2g1438 494 Pfam Malectin-like domain 2 188 IPR024788 -
Ssu2g1438 494 Gene3D Phosphorylase Kinase; domain 1 267 329 - -
Ssu2g1438 494 Pfam Protein tyrosine and serine/threonine kinase 333 477 IPR001245 GO:0004672|GO:0006468
Ssu2g1438 494 Gene3D Transferase(Phosphotransferase) domain 1 359 494 - -
Ssu2g1438 494 PANTHER FERONIA RECEPTOR-LIKE KINASE 1 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1438 Ssu-Chr2 59582117 59583652 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1438 1 494 Receptor kinase-like Gene Family AT3G51550 49.165 3.75e-155 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Ssu2g1438 Malectin_like 6.8e-18 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1438 - - gmx:100776859 803.127