Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1424 ATGAGAGCAGGGAAAGGGAACCAGGAAGAGGATGAGTACGAGGAAGAAGACTTCGGTTCTTCCAAAAAACAAGGCACTTCCTCTGCCCTAACACCAACAAAGGTCGCAGATGGAAAAGCCATTGACAAGGCTAGTGCAATAAGATCGAAACATTCTGTAACTGAGCAGCGGAGAAGGAGCAAGATAAATGAGAGATTCCAGATATTGAGGGATCTCATACCTCATAGTGATCAAAAGAGGGACACGGCATCATTTTTATTAGAGGTGATCGAATATGTTCAGTACTTACAGGAGAAGGTACAAAAGTACGAAGGTTCATATCAAGGTTGGAGTCAAGAGCCCTCGAAGTTGATGCCATGGAGAAATAGCCATTGGCGTGTCCAAAGCTTCGCTGGTCAACCGCCAGCTATAAAGAATGGTTTGGGTCCGGTATCGCCTTTTCCTGGAAAGTTTGATGAAAGCAATGTTAGTATCTCTCCAACTATGCTTAGTGGCACCCAGAATACAATAGATCCTGATCAGAGCAGGGATATTGTCAACAAGACAGCAGAGAGGCAACCTGACTTAGCAAGCAAGGGAATACCTCTGCCCCTTGCTATGCCTATGCATGCAAACATGTCTGTTCCTGTCAGAAGTGATGGTGTACTTGCACATCCTCTTCAAGGAACTGCTTCAGATGCACAATCAACCGAATGCCCAGCAACTAGTGAACCACAGAACCTGCAGGACGAACTCACGATTGAAGGAGGGACAATTAGCATCTCAAGTGTATACTCCCAAGGGTTGTTGAATAATCTAACTCAAGCGTTACAAAGTGCTGGTTTAGATTTGTCACAGGCTAGCATCTCAGTTCAGATTAATCTTGGGAAACGAGCAAACAAAGGACTGGGCTGCGGGACCTCTTCTCCCAAGAATCATGACAACCCTCCTTCAAACAATCAAACAATTGCACATTTTAGAGATGCAGGCAGTGGAGAAGACTCGGATCAAGCACAAAAACGAATGAAAACATATAAATGA 1020 0.4461 MRAGKGNQEEDEYEEEDFGSSKKQGTSSALTPTKVADGKAIDKASAIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQGWSQEPSKLMPWRNSHWRVQSFAGQPPAIKNGLGPVSPFPGKFDESNVSISPTMLSGTQNTIDPDQSRDIVNKTAERQPDLASKGIPLPLAMPMHANMSVPVRSDGVLAHPLQGTASDAQSTECPATSEPQNLQDELTIEGGTISISSVYSQGLLNNLTQALQSAGLDLSQASISVQINLGKRANKGLGCGTSSPKNHDNPPSNNQTIAHFRDAGSGEDSDQAQKRMKTYK 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1424 339 MobiDBLite consensus disorder prediction 295 339 - -
Ssu2g1424 339 Pfam Helix-loop-helix DNA-binding domain 48 97 IPR011598 GO:0046983
Ssu2g1424 339 Gene3D - 44 117 IPR036638 GO:0046983
Ssu2g1424 339 MobiDBLite consensus disorder prediction 298 319 - -
Ssu2g1424 339 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 44 118 IPR036638 GO:0046983
Ssu2g1424 339 MobiDBLite consensus disorder prediction 41 59 - -
Ssu2g1424 339 MobiDBLite consensus disorder prediction 322 339 - -
Ssu2g1424 339 MobiDBLite consensus disorder prediction 1 59 - -
Ssu2g1424 339 CDD bHLH_AtBIM_like 45 121 - -
Ssu2g1424 339 PANTHER TRANSCRIPTION FACTOR BIM2 1 337 - -
Ssu2g1424 339 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 337 IPR044295 GO:0003700|GO:0006351|GO:0046983
Ssu2g1424 339 SMART finulus 52 102 IPR011598 GO:0046983
Ssu2g1424 339 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 96 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1424 Ssu-Chr2 58963846 58968088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1424 1 337 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 57.059 1.58e-119 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu2g1424 HLH 1.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1424 - - gmx:100816055 613.994