Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1412 atggGAAGATCTCCATGTTGTGATGAAATTGGTTTGAAGAAAGGCCCTTGGACACCTGAAGAAGATCAAAAGCTTATTGACCACATTCAAAAATATGGTCATGCAAGCTGGAGGGCTCTTCCAAAACTTGCAGGACTCAACAGATGTGGCAAAAGTTGCAGATTAAGGTGGACGAACTACTTGAGGCCTGACATTAAAAGAGGGAAGTTTTCCCAAGAGGAAGAACAAACAATTCTCAATCTCCATGCCGTCCTTGGAAACAAATGGTCCGCAATAGCTAGTCACTTACCGGGTCGGACTGATAATGAAATCAAGAATTTTTGGAACACCCATCTTAAGAAGAAGCTGATTCAAATGGGTTATGATCCAATGACACACCAGCCTCGAATTGATGATATCTTCTCAGGCTTGTCTCATCTCTTAGCACTGGCTAACCTGAAAGAACTCTTGGACCTTCATCATCAACCATGGGAACAAAACCTTGCAAGGCTACAAGAAGAGACCATCCAATTGGCCAGGCTCCAATGCTTGCAGCAACAACACCTCCTGCAGCCACAAGCTTCAACTGAGGCAGATCCTAATACAAGAAATAGTATGAACAGTACCTTCATGAACAAGGACACCATCAATGTTTCAAATGATGTTTCACACGATCAGTTTGAGAACTACTATGCCATCTAA 681 0.4244 MGRSPCCDEIGLKKGPWTPEEDQKLIDHIQKYGHASWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILNLHAVLGNKWSAIASHLPGRTDNEIKNFWNTHLKKKLIQMGYDPMTHQPRIDDIFSGLSHLLALANLKELLDLHHQPWEQNLARLQEETIQLARLQCLQQQHLLQPQASTEADPNTRNSMNSTFMNKDTINVSNDVSHDQFENYYAI 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1412 226 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ssu2g1412 226 SMART sant 13 63 IPR001005 -
Ssu2g1412 226 SMART sant 66 114 IPR001005 -
Ssu2g1412 226 CDD SANT 69 112 IPR001005 -
Ssu2g1412 226 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ssu2g1412 226 CDD SANT 16 61 IPR001005 -
Ssu2g1412 226 Gene3D - 69 116 - -
Ssu2g1412 226 PANTHER TRANSCRIPTION FACTOR MYB39-LIKE 1 212 - -
Ssu2g1412 226 Gene3D - 11 67 - -
Ssu2g1412 226 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu2g1412 226 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 212 - -
Ssu2g1412 226 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Ssu2g1412 226 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Ssu2g1412 226 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ssu2g1412 226 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1412 Ssu-Chr2 58719202 58720256 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1412 1 210 MYB Transcription Factor Family AT5G10280 66.204 5.10e-96 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu2g1412 Myb_DNA-binding 2.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1412 K09422 - gmx:100785374 369.777