Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1406 ATGTGCAGGTTTTGGATTTTTCACCCTCTCCTTTCCTTCAACCACGCCCTCATCTCCCCTCTCCACCACACCCTCCCACACACCCATCCCCAAACCCTAATCTACACCCTCACTTCTCCCTCCTCCCATCCAAGCTCAACACGCTCCACCTACTCCTGCGTCTCTCCGACGACGACTCCTTCTGGCACCGCCTCTCTGACTCCCTCTCCCTCCTCGCTTGCACCGACGACCCCCCCCAATGACTCCCTCCGCCACCGCGTCCTCTCCCTCCTCCTCAACCTCTCCCTCGACAATGACACCAAGGTCGACCTCGTCGCCGAGGGCGTCCTCACCTGCCTCGTTGCCCTCCTTCTTGTTGCGGCCCCCTCCACCTTTcgcaccgtcaccaccaccccCCTCACTAGCCTCGCTGTCCTCCACACCAACAAGGCCACCATTGGAGCATTCCCACGTGCCATTCATATCCTCTTGTCCGTCGTCCGCGACAACAAGggcaaagagaagaaagaaactgCCATCGCGCTTTACACTATTTGTTCTTTCCCCAATAACAAGAGAAAATCAGTTGAATGTGGCATTGTTCCCATTTTGCTTCAAAGTGACGATTGTAGACTTGAAAGGAGCGTTGAGGTTATCGTTGTTTTGGCAAAGTGTAAACGTGTGTTTGGTAGCACGTCCCATACGCGAGTCTTTGAAGATTTTCGCGTCAATTTTGAGGGAAATGCTCTCGAGGCCTTGAGAGATGGGGTTTGGAAATTTGTGAAGGGTTGGTGCACGATGATATTTACTGTCGTGGCTCACCAAAAGTTGAAAGGAAATGAATTCAAACATGAAAGTGCTGGACGTGGTAACAGGGGAACACAAACTGATGAAATTGCTCAGTAA 885 0.4983 MCRFWIFHPLLSFNHALISPLHHTLPHTHPQTLIYTLTSPSSHPSSTRSTYSCVSPTTTPSGTASLTPSPSSLAPTTPPNDSLRHRVLSLLLNLSLDNDTKVDLVAEGVLTCLVALLLVAAPSTFRTVTTTPLTSLAVLHTNKATIGAFPRAIHILLSVVRDNKGKEKKETAIALYTICSFPNNKRKSVECGIVPILLQSDDCRLERSVEVIVVLAKCKRVFGSTSHTRVFEDFRVNFEGNALEALRDGVWKFVKGWCTMIFTVVAHQKLKGNEFKHESAGRGNRGTQTDEIAQ 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1406 294 MobiDBLite consensus disorder prediction 38 80 - -
Ssu2g1406 294 Gene3D - 72 220 IPR011989 -
Ssu2g1406 294 PANTHER U BOX DOMAIN-CONTAINING 14 220 - -
Ssu2g1406 294 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 220 - -
Ssu2g1406 294 SUPERFAMILY ARM repeat 79 199 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1406 Ssu-Chr2 58574766 58578169 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1406 27 255 U-box Gene Family AT4G21350 39.331 1.25e-36 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1406 - - gmx:100796272 172.17