Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1401 ATGAGTGACAAAGAGAAGTTTGAGGTGGATAGAAACGAAGATCCTATGAGTTATTCTAGTGGTATGCACTCGGATTGGAGATTTGGGGGTGCAAATCTTGCAAATTCTTCTGTAGGTTTGGTTGGCTTGGGGAATTCTATGAATGTCAGCAGAGGGGATTTGATTGGTTCTTCTTCATGTTCCTCTGCTTCAATGGTGGACTCATTTGGTCCAAACTACTGGGACAACCCCACCAGTTCCCAGAACTTGGGATTTTGTGACATTAATGTCCACAACAATGGGGCCTCTTCAACCACAGCTGGAATCAGGAAAGATGGCTTTGGCTTTGGAAGAGCTGGTCAGGATCATCATGGAACACTTGAAATGGGTTGGAACCCTGCTAATTCTATGTTACCAAATGGACCAGGGATGTTTCCCCACAGTTTATCTCAGTTTCCAACTGATTCTGGATTCATTGAGAGAGCTGCAAGATTCTCATGCTTCAGTGGAGGGAATTTTGGTGATATGGTGAACTCATATGGGATTCCTCAATCCATGGGGCTGTATGCTGGGAGTGGTGGCACAATGCATGGAGCAAGAGATGCTCTTACAGGCCATGGATTGAAATCAGTAACTGGAGGACAATCTCAAGAAAATGATCTGAATGTAGTTGAAGCTACAAAAGATGTGTCTCCATATGTTGAGCATCTGGCTGCTAAAGGAAGCCCTCTCAAGAATGATAAAAGAAGTGAAGGTCATGTTATATCTCAAGATGAAGGGAAGCAATCTCTTGTTAGGCCTGCTAATGAGTCTGACAGAGATGAGTctagtgatgatggtggtggccaGGATGATTCCCCAATGTTGGAGGGTACTAGTGGGGAACCTTCTATCAAAGGACTAAactcaaagaaaaggaaaagaagtggGCAGGATGCTGATAATGATAAAGCCAATGGAGCTCCAGAACTACCTAGTGAAGGTGCAAAGGACAACTCTGAGAATCAACAGAAGGGAGACCAACAACCAACTTCAACAAACAAGGCTTCTGGGAAGAATGCCAAACTGGGGCCTCAGGCTTCTGATCCACCTAAGGAGGAATACATACACGTTAGGGCTCGCCGGGGTCAAGCAACAAATAGCCATAGCCTTGCAGAGAGAGtgaggagggaaaagataagtGAGAGGATGAAGTTTCTTCAAGACCTTGTACCTGGATGCAGCAAGgtCACTGGCAAGGCAGTAATGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAGTTTTTGTCTATGAAACTTGCAACAGTAAATCCACGGCTGGATTTTAATATTGAAGGACTTCTTGCTAAAGATATTCTTCAACAACGGCCTGGTCCTTCGTCTGCACTAGGGTTTCCTCTAGATATGTCCATGGCTTTTCCTCCGTTACATCCATCTCAACCAGGGCTGATTCATCCAATTATTCCCAACATGGCAAACTCATCTGACATCCTCCAAAGAACCATCCATCCACAGTTAGCAACCTTGAATGGTGGATTCAAGGAGCCAAATCAGCTGCCCGAGGTATGGGAAGATGAGCTTCACAATGTTGTACAGATGAGCTTTGCAGCAACTGCTCCCCTGAGTAGCCAAGATGTTGATGGTACTGTGCCAGTAAGTCAGATGAAAGTTGAACTTTGA 1674 0.4295 MSDKEKFEVDRNEDPMSYSSGMHSDWRFGGANLANSSVGLVGLGNSMNVSRGDLIGSSSCSSASMVDSFGPNYWDNPTSSQNLGFCDINVHNNGASSTTAGIRKDGFGFGRAGQDHHGTLEMGWNPANSMLPNGPGMFPHSLSQFPTDSGFIERAARFSCFSGGNFGDMVNSYGIPQSMGLYAGSGGTMHGARDALTGHGLKSVTGGQSQENDLNVVEATKDVSPYVEHLAAKGSPLKNDKRSEGHVISQDEGKQSLVRPANESDRDESSDDGGGQDDSPMLEGTSGEPSIKGLNSKKRKRSGQDADNDKANGAPELPSEGAKDNSENQQKGDQQPTSTNKASGKNAKLGPQASDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEGLLAKDILQQRPGPSSALGFPLDMSMAFPPLHPSQPGLIHPIIPNMANSSDILQRTIHPQLATLNGGFKEPNQLPEVWEDELHNVVQMSFAATAPLSSQDVDGTVPVSQMKVEL 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1401 557 MobiDBLite consensus disorder prediction 322 347 - -
Ssu2g1401 557 Gene3D - 367 440 IPR036638 GO:0046983
Ssu2g1401 557 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 368 439 IPR036638 GO:0046983
Ssu2g1401 557 Pfam Helix-loop-helix DNA-binding domain 373 421 IPR011598 GO:0046983
Ssu2g1401 557 MobiDBLite consensus disorder prediction 293 307 - -
Ssu2g1401 557 MobiDBLite consensus disorder prediction 234 249 - -
Ssu2g1401 557 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 370 420 IPR011598 GO:0046983
Ssu2g1401 557 PANTHER BHLH TRANSCRIPTION FACTOR 10 556 - -
Ssu2g1401 557 SMART finulus 376 426 IPR011598 GO:0046983
Ssu2g1401 557 MobiDBLite consensus disorder prediction 231 357 - -
Ssu2g1401 557 CDD bHLH_AtBPE_like 360 445 - -
Ssu2g1401 557 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 10 556 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1401 Ssu-Chr2 58332652 58335482 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1401 56 535 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 47.658 2.50e-122 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu2g1401 HLH 7.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1401 - - gmx:100797720 994.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1401 2 58332652 58335482 Ssu2g1401 2 58332652 58335482 ECH