LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu2g1380	ATGAAAAATGAAGGGACAACAAGGGAGGGAGCCTCGGTGAGTGCTCTGATCATTACAACTGTGCACATTGGATCAATTTTGAGGCACATTCTCTTCTGGGAAAGCAGGAGTTGTTCAATGGCAAAAGATACTTCTGATTCTGATTCCCATCACAAACGTCTTGGTCTTTTAAAAGATCAAGTTCACTTGGTTAAAAGGAAAGACTCTGATCGCTATGAGATTACTCCAATCCAAGACCAACTATCATTTGAGAAGggtttttttatagtaattcgTGCATGCCAATTGTTAGCCCAAAAGAATGATGGAACAATATTGGTAGGGGTGGCAGGTCCTTCAGGGGCGGGGAAGACTGTATTTACTGAAAAGATACTCAACTTCATGCCCAGCATTGCAGTCATTTCAATGGATAACTACAATGATTCTAGTCGAATTGTTGATGGAAATTTTGATGATCCCCGCTTAACAGACTATGACACATTACTCCAGAACCTACATGATCTAAAAGAAGGAAAGCCAGTTCAAGTTCCCATATATGATTTCAAGTCCAGTTCACGTACAGGATACAGGACAGTAGAAGCCCCAAGTTCTCGTATTGTGATTATAGAGGGCATCTATGCCTTGAGTGAGAAGTTGCGACCTCTACTGGACCTTCGAGTCTCTGTTACGGGAGGAGTTCACCTTGACCTTGTAAAACGAGTTATACGTGATATACAACGTGCTGGTCAAGAACCTGAAGaaattattcatcaaatatCTGAGACGGTGTATCCAATGTACAAGGCCTATATCGAGCCAGATCTGCAGACAGCACATataaaaatcatcaacaaattcaATCCATTTACTGGATTCCAGAGCCCTACTTACATATTGAAGTCAGCAAGGAATGTAACAGGGGATCAAATTAAAGCTGTTCTCACTGAGGATTTTAAGGAGACAACAGAGCAAACTTATGACATATATCTACTACCACCTGGTGAAGATCCAGAAACTTGCCAATCATATTTACGGATGCGAAATAAGGATGGGAAATACAGTCTCATGTTTGAGGAATGGGTGACAGATAATCCATTTGTCATATCACCAAGAATTACTTTTGAGGTCAGCGTGCGCCTTCTTGGTGGACTAATGGCCTTGGGATACACAATAGCCACTATCCTTAAGAGAAACAGCCATGTCTTTTCTGATGATAGGGTTTGTGTGAAACTAGATTGGCTTGAGCAACTTAACAGACATTATGTTCAGGTACAAGGAAGAGATCGCCTAGTTGTAAAATATGTAGGACAGCAGCTGGGTCTAGAAGGTTCCTACATTCCTCGTACCTACATTGagcaaattcaaattgaaaaacttgtGAATGAGGTTATGGCCCTACCAGATGATTTGAAGACAAAGCTCAGCCTAGATGAGGATTTGGTGTCAAGCCCCAAAGAAGCACTTTCTAGAGCCTCTGCCGACAGAGTTGCCATGAGAAATAAACATCTGAGGAGTGGAATATCACAGTCATATACACATCAAAGGGACAAAAATCTAGCCAAGGTTAACAATAGAAGGTTTGGTGATAGAAATTCAGACACCACTGCAATGCCAGTAAATCAGGGAGCCATCAATCAGCTTTCGGACCAAATTTCTGCCCTCAATGATAGAATGGATGAGTTTACAAATCGCATTGAAGAACTGAACTCCAAGTTAACCATCAAGAAAAGTTCTCCAAGCCAACAAAATATGTCACTTCAAGCAGAGACATGCAATGGATCTGCTCCCACCTCTTACTTCATCAATAGTTTGGGCAATGGTTCCCTAACTGGATCTAAAATGACAAATTCCTCATCGTCATCGCAGTTAGTTAAAGATTCTCCTTTAATGGATGAGATATCAGGCATTGCACGCAGTCAGCGTCAGATTATGCATCAATTGGACAATCTCAATAACCTTCTCAGGGGGAGCTTGGGGGAAAAGTCTCACCAAACAAGAACCAACAGGAAAAGCGTTGATACAGCATCAGATTCCACGGGAGCTTGTGTTATGACGGTGGTGGCAGTTGGTTGTTTGGGGATCTTATTGATAAAGGGCTTATTGAACCGAAAGTGA	2094	0.4059	MKNEGTTREGASVSALIITTVHIGSILRHILFWESRSCSMAKDTSDSDSHHKRLGLLKDQVHLVKRKDSDRYEITPIQDQLSFEKGFFIVIRACQLLAQKNDGTILVGVAGPSGAGKTVFTEKILNFMPSIAVISMDNYNDSSRIVDGNFDDPRLTDYDTLLQNLHDLKEGKPVQVPIYDFKSSSRTGYRTVEAPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHLDLVKRVIRDIQRAGQEPEEIIHQISETVYPMYKAYIEPDLQTAHIKIINKFNPFTGFQSPTYILKSARNVTGDQIKAVLTEDFKETTEQTYDIYLLPPGEDPETCQSYLRMRNKDGKYSLMFEEWVTDNPFVISPRITFEVSVRLLGGLMALGYTIATILKRNSHVFSDDRVCVKLDWLEQLNRHYVQVQGRDRLVVKYVGQQLGLEGSYIPRTYIEQIQIEKLVNEVMALPDDLKTKLSLDEDLVSSPKEALSRASADRVAMRNKHLRSGISQSYTHQRDKNLAKVNNRRFGDRNSDTTAMPVNQGAINQLSDQISALNDRMDEFTNRIEELNSKLTIKKSSPSQQNMSLQAETCNGSAPTSYFINSLGNGSLTGSKMTNSSSSSQLVKDSPLMDEISGIARSQRQIMHQLDNLNNLLRGSLGEKSHQTRTNRKSVDTASDSTGACVMTVVAVGCLGILLIKGLLNRK	697

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu2g1380	697	Coils	Coil	537	564	-	-
	Ssu2g1380	697	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	51	275	IPR027417	-
	Ssu2g1380	697	Pfam	CYTH domain	308	443	IPR023577	-
	Ssu2g1380	697	ProSiteProfiles	CYTH domain profile.	287	449	IPR023577	-
	Ssu2g1380	697	CDD	UMPK_like	106	278	-	-
	Ssu2g1380	697	SUPERFAMILY	CYTH-like phosphatases	309	446	IPR033469	-
	Ssu2g1380	697	PRINTS	Uridine kinase signature	104	121	-	-
	Ssu2g1380	697	PRINTS	Uridine kinase signature	263	276	-	-
	Ssu2g1380	697	PRINTS	Uridine kinase signature	171	186	-	-
	Ssu2g1380	697	PRINTS	Uridine kinase signature	227	237	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu2g1380	Ssu-Chr2	57909998	57938544	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu2g1380	105	275	PRT Gene Family	AT5G40870	26.667	2.87e-17	83.6

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu2g1380	K00876		-	gmx:100781286	1176.39

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