Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1380 ATGAAAAATGAAGGGACAACAAGGGAGGGAGCCTCGGTGAGTGCTCTGATCATTACAACTGTGCACATTGGATCAATTTTGAGGCACATTCTCTTCTGGGAAAGCAGGAGTTGTTCAATGGCAAAAGATACTTCTGATTCTGATTCCCATCACAAACGTCTTGGTCTTTTAAAAGATCAAGTTCACTTGGTTAAAAGGAAAGACTCTGATCGCTATGAGATTACTCCAATCCAAGACCAACTATCATTTGAGAAGggtttttttatagtaattcgTGCATGCCAATTGTTAGCCCAAAAGAATGATGGAACAATATTGGTAGGGGTGGCAGGTCCTTCAGGGGCGGGGAAGACTGTATTTACTGAAAAGATACTCAACTTCATGCCCAGCATTGCAGTCATTTCAATGGATAACTACAATGATTCTAGTCGAATTGTTGATGGAAATTTTGATGATCCCCGCTTAACAGACTATGACACATTACTCCAGAACCTACATGATCTAAAAGAAGGAAAGCCAGTTCAAGTTCCCATATATGATTTCAAGTCCAGTTCACGTACAGGATACAGGACAGTAGAAGCCCCAAGTTCTCGTATTGTGATTATAGAGGGCATCTATGCCTTGAGTGAGAAGTTGCGACCTCTACTGGACCTTCGAGTCTCTGTTACGGGAGGAGTTCACCTTGACCTTGTAAAACGAGTTATACGTGATATACAACGTGCTGGTCAAGAACCTGAAGaaattattcatcaaatatCTGAGACGGTGTATCCAATGTACAAGGCCTATATCGAGCCAGATCTGCAGACAGCACATataaaaatcatcaacaaattcaATCCATTTACTGGATTCCAGAGCCCTACTTACATATTGAAGTCAGCAAGGAATGTAACAGGGGATCAAATTAAAGCTGTTCTCACTGAGGATTTTAAGGAGACAACAGAGCAAACTTATGACATATATCTACTACCACCTGGTGAAGATCCAGAAACTTGCCAATCATATTTACGGATGCGAAATAAGGATGGGAAATACAGTCTCATGTTTGAGGAATGGGTGACAGATAATCCATTTGTCATATCACCAAGAATTACTTTTGAGGTCAGCGTGCGCCTTCTTGGTGGACTAATGGCCTTGGGATACACAATAGCCACTATCCTTAAGAGAAACAGCCATGTCTTTTCTGATGATAGGGTTTGTGTGAAACTAGATTGGCTTGAGCAACTTAACAGACATTATGTTCAGGTACAAGGAAGAGATCGCCTAGTTGTAAAATATGTAGGACAGCAGCTGGGTCTAGAAGGTTCCTACATTCCTCGTACCTACATTGagcaaattcaaattgaaaaacttgtGAATGAGGTTATGGCCCTACCAGATGATTTGAAGACAAAGCTCAGCCTAGATGAGGATTTGGTGTCAAGCCCCAAAGAAGCACTTTCTAGAGCCTCTGCCGACAGAGTTGCCATGAGAAATAAACATCTGAGGAGTGGAATATCACAGTCATATACACATCAAAGGGACAAAAATCTAGCCAAGGTTAACAATAGAAGGTTTGGTGATAGAAATTCAGACACCACTGCAATGCCAGTAAATCAGGGAGCCATCAATCAGCTTTCGGACCAAATTTCTGCCCTCAATGATAGAATGGATGAGTTTACAAATCGCATTGAAGAACTGAACTCCAAGTTAACCATCAAGAAAAGTTCTCCAAGCCAACAAAATATGTCACTTCAAGCAGAGACATGCAATGGATCTGCTCCCACCTCTTACTTCATCAATAGTTTGGGCAATGGTTCCCTAACTGGATCTAAAATGACAAATTCCTCATCGTCATCGCAGTTAGTTAAAGATTCTCCTTTAATGGATGAGATATCAGGCATTGCACGCAGTCAGCGTCAGATTATGCATCAATTGGACAATCTCAATAACCTTCTCAGGGGGAGCTTGGGGGAAAAGTCTCACCAAACAAGAACCAACAGGAAAAGCGTTGATACAGCATCAGATTCCACGGGAGCTTGTGTTATGACGGTGGTGGCAGTTGGTTGTTTGGGGATCTTATTGATAAAGGGCTTATTGAACCGAAAGTGA 2094 0.4059 MKNEGTTREGASVSALIITTVHIGSILRHILFWESRSCSMAKDTSDSDSHHKRLGLLKDQVHLVKRKDSDRYEITPIQDQLSFEKGFFIVIRACQLLAQKNDGTILVGVAGPSGAGKTVFTEKILNFMPSIAVISMDNYNDSSRIVDGNFDDPRLTDYDTLLQNLHDLKEGKPVQVPIYDFKSSSRTGYRTVEAPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHLDLVKRVIRDIQRAGQEPEEIIHQISETVYPMYKAYIEPDLQTAHIKIINKFNPFTGFQSPTYILKSARNVTGDQIKAVLTEDFKETTEQTYDIYLLPPGEDPETCQSYLRMRNKDGKYSLMFEEWVTDNPFVISPRITFEVSVRLLGGLMALGYTIATILKRNSHVFSDDRVCVKLDWLEQLNRHYVQVQGRDRLVVKYVGQQLGLEGSYIPRTYIEQIQIEKLVNEVMALPDDLKTKLSLDEDLVSSPKEALSRASADRVAMRNKHLRSGISQSYTHQRDKNLAKVNNRRFGDRNSDTTAMPVNQGAINQLSDQISALNDRMDEFTNRIEELNSKLTIKKSSPSQQNMSLQAETCNGSAPTSYFINSLGNGSLTGSKMTNSSSSSQLVKDSPLMDEISGIARSQRQIMHQLDNLNNLLRGSLGEKSHQTRTNRKSVDTASDSTGACVMTVVAVGCLGILLIKGLLNRK 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1380 697 Coils Coil 537 564 - -
Ssu2g1380 697 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 51 275 IPR027417 -
Ssu2g1380 697 Pfam CYTH domain 308 443 IPR023577 -
Ssu2g1380 697 ProSiteProfiles CYTH domain profile. 287 449 IPR023577 -
Ssu2g1380 697 CDD UMPK_like 106 278 - -
Ssu2g1380 697 SUPERFAMILY CYTH-like phosphatases 309 446 IPR033469 -
Ssu2g1380 697 PRINTS Uridine kinase signature 104 121 - -
Ssu2g1380 697 PRINTS Uridine kinase signature 263 276 - -
Ssu2g1380 697 PRINTS Uridine kinase signature 171 186 - -
Ssu2g1380 697 PRINTS Uridine kinase signature 227 237 - -
Ssu2g1380 697 Pfam Phosphoribulokinase / Uridine kinase family 107 275 IPR006083 GO:0005524|GO:0016301
Ssu2g1380 697 MobiDBLite consensus disorder prediction 497 530 - -
Ssu2g1380 697 PANTHER PHOSPHORIBULOKINASE/URIDINE KINASE-LIKE PROTEIN 37 689 - -
Ssu2g1380 697 PANTHER URIDINE KINASE 37 689 - -
Ssu2g1380 697 Gene3D - 104 285 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1380 Ssu-Chr2 57909998 57938544 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1380 105 275 PRT Gene Family AT5G40870 26.667 2.87e-17 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1380 K00876 - gmx:100781286 1176.39