Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1379 ATGCGGCGCATATTCTTTCTACTGGCTTTCTTACTCAACTCAGttgGAGCTGAGGCAGAGGGTGCGAGCATTGATTTGCTCTTGAGTGACGTTAAGGATAAGGATTTGGCAGAGAGTGGCCTTGCACCTATTACTGAAGCAAGGGAGGAAAAGAAGttggaagagaaggaggagTCTGATGATTGCAAGAAGAAGGTTGGCCATGGTGAACACATTAATCAAATCAATGAGTACATGTTGGGTGCAATACTTCTATTGatagttcaaaattttgaagttaaagTTGGAGCTAAGGTTGAGGATGCGAGCATTGAGGTGCTCTTAATTGAAGTTAAAGGCAAAGATTTGGCAAAGCTAATTGCTAGTGGAAGAGAGAAATTGGCCGCGGTGCCTTGctgtggtggtggtgttgttgttgctatttcaCCTGTGGGAGCTGCTGTAGCTGGTAGCaagtga 459 0.3769 MRRIFFLLAFLLNSVGAEAEGASIDLLLSDVKDKDLAESGLAPITEAREEKKLEEKEESDDCKKKVGHGEHINQINEYMLGAILLLIVQNFEVKVGAKVEDASIEVLLIEVKGKDLAKLIASGREKLAAVPCCGGGVVVAISPVGAAVAGSK 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1379 152 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 94 149 IPR044076 GO:0002182|GO:0003735|GO:0022625
Ssu2g1379 152 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P2-1 11 38 - -
Ssu2g1379 152 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P2-1 94 149 - -
Ssu2g1379 152 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 11 38 IPR044076 GO:0002182|GO:0003735|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1379 Ssu-Chr2 57871284 57878273 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1379 95 135 Cytoplasmic Ribosomal Protein Gene Family AT2G27710 73.171 4.07e-13 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1379 K02943 - egr:104421287 68.1662